Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30b14
         (749 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.3  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   4.0  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   4.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   4.0  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   4.0  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   7.1  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    21   9.3  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 326 LNLQDISQKYFDGNYFYGNWTFRTIFAGSECN 421
           +N+Q+   +   G YFY N T +   + +E N
Sbjct: 363 INIQENGDQVSVGRYFYPNGTEKMTLSVNESN 394


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 584 LRSIL*LPQT-LWNSLISTIICNATFKTLLQTL 679
           L S+L L  T L +SLI TI+C  T    L TL
Sbjct: 16  LSSVLSLSLTSLASSLIFTILCILTLALTLVTL 48


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 584 LRSIL*LPQT-LWNSLISTIICNATFKTLLQTL 679
           L S+L L  T L +SLI TI+C  T    L TL
Sbjct: 16  LSSVLSLSLTSLASSLIFTILCILTLALTLVTL 48


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 584 LRSIL*LPQT-LWNSLISTIICNATFKTLLQTL 679
           L S+L L  T L +SLI TI+C  T    L TL
Sbjct: 16  LSSVLSLSLTSLASSLIFTILCILTLALTLVTL 48


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 584 LRSIL*LPQT-LWNSLISTIICNATFKTLLQTL 679
           L S+L L  T L +SLI TI+C  T    L TL
Sbjct: 16  LSSVLSLSLTSLASSLIFTILCILTLALTLVTL 48


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 744 FISIHCVE*SRKKYNYVCIKYYSVCRSVL-KVALQIMVEIRLF 619
           FI++HC E   K Y +   +     R ++    L++  +IR+F
Sbjct: 44  FIALHCQEVGGKNYEHSTRQVEDFVRLLMSSEELRLFDKIRVF 86


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -1

Query: 422 NCIHCRRRLYEKSNFRKN 369
           +C HC R+  + +N R++
Sbjct: 39  HCSHCDRQFVQVANLRRH 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,853
Number of Sequences: 438
Number of extensions: 3844
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)