Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30b13
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    31   0.24 
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    30   0.42 
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    30   0.42 
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    27   3.0  
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    27   3.9  
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    25   9.0  
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity...    25   9.0  

>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 644 LNTLVKKCPKSLIIFDEIHHMCPSVLDTIIPMLD 745
           L   +++ P S+I+FDEI    P VL  ++ +LD
Sbjct: 678 LTEQLRRRPYSVILFDEIEKAAPEVLTVLLQVLD 711


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 608  ELEKKKQMLVNTLNTLVKKCPKSLII--FDEIHHMCPSVLDTI 730
            EL KKK  ++  L+ L+KK PK L +   D   H    V+D I
Sbjct: 1167 ELLKKKDEVMAELDALIKKTPKELWLHDLDAFEHAWNKVMDDI 1209


>SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1079

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
 Frame = +2

Query: 269  YKWDTLKDATYCKFTE-----CCNDYHIPFDVQKLRDSLSQRMFGQPLVNELFNIISAHK 433
            YK D ++ AT  +  +      C D  +  D + L + L  ++F   ++  LF+  +AH+
Sbjct: 867  YKKDVMRCATMLEKAKEYALMLCFDVKVDRDAEDLAEQLGVKIFSANVIYHLFDAFTAHQ 926

Query: 434  ENINE 448
            + I E
Sbjct: 927  KKILE 931


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 9/18 (50%), Positives = 15/18 (83%), Gaps = 1/18 (5%)
 Frame = -2

Query: 72  TIVHVLLKYNKC-IIYAC 22
           T++H+L+K NKC ++Y C
Sbjct: 135 TVLHILMKENKCSLLYPC 152


>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 677 LIIFDEIHHMC-PSVLDTIIPMLDHHSAVDE 766
           L+IFDE+HHM  PS L     +L+H  A  E
Sbjct: 144 LLIFDEVHHMASPSYL----RILEHFGAESE 170


>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
 Frame = +2

Query: 449 SNGNKKALVISLHGWSGVGKNFASTMIAE---AIYRKGMQSNYVKLFMGKKDFDCYELEK 619
           S+G K    I L+G  G GK++ +  +A    + +     S+ V  +MG           
Sbjct: 156 SHGRKPWSGILLYGPPGTGKSYLAKAVATEAGSTFFSISSSDLVSKWMG----------- 204

Query: 620 KKQMLVNTLNTLVKKCPKSLIIFDEIHHMCPS 715
           + + LV  L  + ++   S+I  DEI  +C S
Sbjct: 205 ESERLVRQLFEMAREQKPSIIFIDEIDSLCGS 236


>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ctf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 431 KENINESNGNKKALVISLHGWSGVGKNFASTMIAEAIYRKGMQSNYVK 574
           ++N +ES+ N + +   LH  S +  +    M + AIY   M +N  K
Sbjct: 105 QQNAHESSYNSRFIPPVLHSTSSLPASQGGGMPSPAIYSSSMATNLNK 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,274,110
Number of Sequences: 5004
Number of extensions: 69203
Number of successful extensions: 171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)