Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30b13
(769 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0192 + 27347369-27348826,27349124-27349264,27349350-273510... 38 0.012
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287... 34 0.14
06_03_1131 + 27872870-27872958,27873036-27873281,27874058-278741... 33 0.19
02_05_0182 + 26530799-26530852,26531677-26532927,26533250-265333... 33 0.19
05_02_0164 - 7240739-7243051,7243902-7244036,7244322-7245371 31 0.77
02_04_0114 + 19879468-19880671,19882007-19882179,19882265-198826... 30 2.3
02_05_1010 + 33477878-33478446,33478709-33478834,33478905-334791... 29 3.1
02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-52... 29 3.1
05_06_0104 - 25603568-25603867,25603965-25604162,25604247-256045... 29 5.4
02_05_1089 + 34019162-34019164,34019249-34019465,34019558-340197... 29 5.4
08_01_0663 + 5721902-5723176,5724162-5724233,5724405-5724560,572... 28 9.4
05_03_0281 + 11560402-11560569,11561373-11561579,11562966-115631... 28 9.4
>01_06_0192 +
27347369-27348826,27349124-27349264,27349350-27351081,
27353739-27354606,27354784-27355957
Length = 1790
Score = 37.5 bits (83), Expect = 0.012
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Frame = +2
Query: 476 ISLHGWSGVGKNFASTMIAEAIYRKGMQSNYVKLFMGKKDFDC---YELEKKKQMLVNTL 646
+ LHG G GK T++ A+ Q N + +K DC Y + ++Q+ + L
Sbjct: 681 VLLHGHPGTGK----TLVVRALIGACSQGNRRIAYFARKGADCLGKYVGDAERQLRL--L 734
Query: 647 NTLVKKCPKSLIIFDEIHHMCPS 715
+ ++C S+I FDEI + PS
Sbjct: 735 FQVAERCQPSIIFFDEIDGLAPS 757
>08_01_0321 +
2872609-2873027,2873477-2873905,2874743-2874944,
2875909-2875947,2876309-2876354,2877380-2877922,
2878827-2880847,2880972-2881215,2881642-2881684,
2881923-2881962,2883580-2883675,2883712-2883759,
2883964-2884290
Length = 1498
Score = 33.9 bits (74), Expect = 0.14
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +2
Query: 401 NELFNIISAHKENINESNGNKKALVISLHGWSGVGKNFASTMIAEAI 541
+EL ++S H+ + N + N+K ++ + G G+GK +T + E I
Sbjct: 177 DELIKMLSQHERDNNLNTSNRKTKIVYVVGMGGLGKTTLATAVYEKI 223
>06_03_1131 +
27872870-27872958,27873036-27873281,27874058-27874163,
27874665-27875209,27875455-27875914,27876234-27876319,
27877092-27877194
Length = 544
Score = 33.5 bits (73), Expect = 0.19
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +2
Query: 578 FMGKKDFDCYELEKKK-QMLVNTLNTLVKKCPKSLIIFDEIHHMCPSVLD 724
F KKD + E+E+++ Q V L L K C KS+ F+E H C +LD
Sbjct: 430 FYYKKDLERMEVEERQGQNFVEALLFLAKHC-KSIGRFEEAEHYCTRLLD 478
>02_05_0182 +
26530799-26530852,26531677-26532927,26533250-26533335,
26533673-26533733
Length = 483
Score = 33.5 bits (73), Expect = 0.19
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +2
Query: 578 FMGKKDFDCYELEKKK-QMLVNTLNTLVKKCPKSLIIFDEIHHMCPSVLD 724
F KKD + E+E+++ Q V L L K C KS+ F+E H C +LD
Sbjct: 383 FYYKKDLERMEVEERQGQNFVEALLFLAKHC-KSIGRFEEAEHYCTRLLD 431
>05_02_0164 - 7240739-7243051,7243902-7244036,7244322-7245371
Length = 1165
Score = 31.5 bits (68), Expect = 0.77
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +2
Query: 395 LVNELFNIISAHKENINESNGNKKALVISLHGWSGVGKNFASTMI 529
LVN L N + + SNGN +V+++ G G+GK +TM+
Sbjct: 180 LVNLLVNRVDDDHDPARSSNGN--VIVVAITGVGGIGKTTLATMV 222
>02_04_0114 +
19879468-19880671,19882007-19882179,19882265-19882605,
19882698-19882977,19883070-19883267,19883380-19883652
Length = 822
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 644 LNTLVKKCPKSLIIFDEIHHMCPSVLDTIIPMLDHHSAVD 763
L V+ P S+I+FDE+ PSV + + +LD D
Sbjct: 583 LTEKVRTRPYSVILFDEVEKADPSVFNVFLQLLDDGMLTD 622
>02_05_1010 +
33477878-33478446,33478709-33478834,33478905-33479190,
33479293-33479484,33479641-33479870,33480379-33480718,
33481673-33481789,33481940-33482014
Length = 644
Score = 29.5 bits (63), Expect = 3.1
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 491 SHGDLLLELSCSHCFH 444
+H D L EL C+HCFH
Sbjct: 337 AHNDELRELPCTHCFH 352
>02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-523368,
525209-525401,525978-526330,526693-526791,526864-526935,
527062-527213,527338-527386,527755-527885,528067-528307,
528392-528565,528656-528797,529236-529282,529370-529450,
530170-530271,530345-530440,531437-531444,531575-531616,
531830-531894,534761-534853,534888-534959,535303-535509,
536318-537226,537503-538158
Length = 1429
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 575 LFMGKKDF--DCYELEKKKQMLVNTLNTLVKKCPKSL 679
+F+G+K +C+++ K +L N +NT V K K L
Sbjct: 1152 IFLGEKQCPDNCFDITSKTNVLYNKINTFVVKLDKKL 1188
>05_06_0104 -
25603568-25603867,25603965-25604162,25604247-25604526,
25604615-25605419,25605518-25606673
Length = 912
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 644 LNTLVKKCPKSLIIFDEIHHMCPSVLDTIIPMLDHHSAVD 763
L V++ P S+I+FDE+ +V +T++ +LD D
Sbjct: 664 LTEQVRRRPYSVILFDEVEKAHVAVFNTLLQVLDDGRLTD 703
>02_05_1089 +
34019162-34019164,34019249-34019465,34019558-34019714,
34019935-34020071,34020387-34020490,34020593-34020688,
34020818-34020908,34021384-34021504,34021579-34021775,
34022605-34022705,34022778-34022833,34023689-34023778,
34023865-34023964,34024194-34024295,34024372-34024441,
34024696-34024850,34024944-34025068,34025126-34025144
Length = 646
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/85 (23%), Positives = 39/85 (45%)
Frame = +2
Query: 395 LVNELFNIISAHKENINESNGNKKALVISLHGWSGVGKNFASTMIAEAIYRKGMQSNYVK 574
++N L N+ +AH + + G KALV W+G + + + A + + +
Sbjct: 518 IINFLSNMKNAHIQMGSCFVGLLKALV----SWTGTADDSSVIITASCLCTLVLDLTTEE 573
Query: 575 LFMGKKDFDCYELEKKKQMLVNTLN 649
+ DFD LEK +++ +L+
Sbjct: 574 FLLSSSDFDSKTLEKLSKLIARSLH 598
>08_01_0663 +
5721902-5723176,5724162-5724233,5724405-5724560,
5724655-5724844,5725173-5725255
Length = 591
Score = 27.9 bits (59), Expect = 9.4
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +2
Query: 296 TYCKFTECCNDYHIPFDVQKLRDSLSQRMFGQPLVNELFNIIS----AHKENINE 448
++C +ECC+ YH D KL +S S GQ L+ L N S AH +N+
Sbjct: 381 SHCHDSECCSSYH---DTCKLANSFS----GQDLLCSLSNARSLELLAHSGEVNK 428
>05_03_0281 +
11560402-11560569,11561373-11561579,11562966-11563174,
11563261-11563309,11563611-11563673,11563799-11565472
Length = 789
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 306 LQYVASFKVSHLYHPLARTIADPTK 232
L YV F +SHL +AR + DP K
Sbjct: 561 LSYVEQFGLSHLVPEMARLLPDPQK 585
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,181,308
Number of Sequences: 37544
Number of extensions: 366198
Number of successful extensions: 825
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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