Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30b08
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    28   1.5  
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ...    28   1.5  
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    27   2.6  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    27   3.4  
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch...    27   3.4  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    26   4.5  
SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces...    26   5.9  
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    26   5.9  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    25   7.9  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    25   7.9  
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch...    25   7.9  

>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 326 LNKYKKYRAKDRIDELLNESKEAIRQTNEFLEKWRLRRVSAPLMT 460
           LN +KK R+    D LL    E +     F++ W  R+ S PL++
Sbjct: 793 LNTFKKIRSSHLDDALLVLPFEHVLSLFRFIDIWASRKWSIPLVS 837


>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 486

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +2

Query: 11  FDVPHAIVCESNKILKFSVRQIKMLVQTLSTLMYTFVFLSLFLVDYLLGNGFVDMFQTIF 190
           +D+ +AI  E NK+ + + +  K        L     FL+  +  +LL NGFV+  +  F
Sbjct: 235 YDIDYAIQMEKNKLFEQATKSPKQ-----EELKQRQEFLNELISSFLLNNGFVETAKK-F 288

Query: 191 C 193
           C
Sbjct: 289 C 289


>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
 Frame = -3

Query: 303 TSISMNMTGMLIGFSLPTNCVFFASSRNVFF-TKQAILQNIVWNISTKPLPNK*STRNKL 127
           T I  + T  L G    T    +  SRNVFF T Q IL +I   I  +   +        
Sbjct: 140 TGIPKSQTAELSGHVPVTTRNQYYQSRNVFFVTPQTILNDIKHGICDRTRISCLVIDEAH 199

Query: 126 KKTKVYIKVLNVCTSILIWRTENFKILLLSHT 31
           + T  Y  V  V   +L    +NF+IL LS T
Sbjct: 200 RSTGNYAYVEVV--HLLSLSNKNFRILALSAT 229


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 301 QYFDEYDRNANRILLANQLRFFRLLSQCFLHETSYLAEYRL 179
           Q +D+    ANR L+      F L ++  L   +YL +YRL
Sbjct: 536 QTYDQTSSTANRYLIFYACVDFLLAAEVILRFFAYLPDYRL 576


>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 538

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 5   DKFDVPHAIVCESNKILKFSVR 70
           DKFDVP A++   ++  K SVR
Sbjct: 485 DKFDVPFAVILGQDEFAKGSVR 506


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 296 ILVLSLTIAFLNKYKKYRAKDRIDELLNESKE 391
           I ++  T+  LN +KKYR+ +RI  L     E
Sbjct: 152 ISLMQATLQLLNFFKKYRSVERIASLSRSISE 183


>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = +2

Query: 335 YKKYRAKDRIDELLNESKEAIRQTNEFLEKWRLRRVSAPLMTSRKYPLDSV 487
           Y   R +D + E     +    Q  EFL   +LRR    L   R  P+D +
Sbjct: 40  YNLPRVRDAMKEEERSRETKEMQEREFLRLQQLRRAIIRLKNDRSKPIDKL 90


>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/87 (19%), Positives = 37/87 (42%)
 Frame = +2

Query: 227 EEAKKTQLVGKENPISIPVIFIEILVLSLTIAFLNKYKKYRAKDRIDELLNESKEAIRQT 406
           E A   ++  +  P  +  +  ++  L + I  L + K   +K+R+     E+++   +T
Sbjct: 400 EAAAAVRVTRESQPEVLDNLERKLRQLRVEIRALEREKDEASKERLKAARKEAEQVEEET 459

Query: 407 NEFLEKWRLRRVSAPLMTSRKYPLDSV 487
               EK+ L +     +   K  LD +
Sbjct: 460 RPIREKYELEKSRGSELQDAKRRLDEL 486


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = +2

Query: 224 REEAKKTQLVGKENPISIPVIFIEILVLSLTIAFLNKYKKYRAKDRIDELLNESKEAIRQ 403
           R +AK T  V      S  VI    + L      ++K  K   K   DE++N+ +  +R 
Sbjct: 548 RFDAKDTNSVLNPCIPSNAVIEFSSIYLHYFATHISKRSKKPGKRLEDEVVNQQQAMLRN 607

Query: 404 TNEFLEKWRLRRVSA 448
               L+K+R   VS+
Sbjct: 608 LPLLLQKYRESCVSS 622


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = +2

Query: 212 KKTLREEAKKTQLVGKENPISIPVIFIEILVLSLTIAFLNKYKKYRAKDRIDELLNE-SK 388
           +++L E  +K +         I     + +V   + AF + Y     KDR++E++NE ++
Sbjct: 18  RRSLDENERKKKYFFNREGSGIDNFETDGMVFQASKAF-DYYLLTTFKDRVNEIINEQNE 76

Query: 389 EAIRQTNEFLEKWRLRRV 442
           E +   + + + WR+  V
Sbjct: 77  ENVIDQSRWSKLWRIWNV 94


>SPAC18G6.07c |mra1||ribosome biogenesis protein
           Mra1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +2

Query: 299 LVLSLTIAFLNKYKKYRAKDRIDELLN--ESKEAIRQTNEFLEKWRLRRVSAPLMTSRKY 472
           L++ L  A L  YK  +AKD   +LLN  + +  +++ N  + + R       L+T    
Sbjct: 150 LIVVLDQACLEIYKVGKAKDAKYQLLNCDDHQGILKKLNRNIAQARPDITHQCLLTLLDS 209

Query: 473 PLDSVSRLVMF 505
           PL+   RL ++
Sbjct: 210 PLNKAGRLQVY 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,902,385
Number of Sequences: 5004
Number of extensions: 60468
Number of successful extensions: 199
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)