Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30b07
         (693 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    25   0.44 
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   5.5  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    21   9.6  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 527 SEGDYNVMVMELLGPSLEDLFNFCSRRFSLK 619
           S   YN+  M   G ++EDL +FC   +S+K
Sbjct: 423 SRDSYNLAGM---GETIEDLLHFCRTMYSMK 450


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 402 VTMFVPKYISPKDPEPIFRPSRY 334
           V +F+P       PE IFRP+ Y
Sbjct: 490 VKIFLPFRFLFYKPEDIFRPNTY 512


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 39  SIYKNLVPRP 68
           +IY NL+PRP
Sbjct: 89  AIYSNLLPRP 98


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,101
Number of Sequences: 336
Number of extensions: 3634
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)