Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30b07
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                27   0.17 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    25   0.90 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   3.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   3.6  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   4.8  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              21   8.4  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 22/89 (24%), Positives = 40/89 (44%)
 Frame = +2

Query: 317 LRVGNKYRLGRKIGSGSFGDIYLGTNIVTREEVAIKLECIKTRHPQLHIESKFYKLMQGR 496
           L+ G   + G  +GSG FG +Y    +   E+VA K+  I+T      + S+ +      
Sbjct: 61  LKDGFPIKCGTFLGSGGFGIVYKA--LYKGEQVAAKI--IQTEKYSNMLNSEKHASFLKH 116

Query: 497 VGIPAIKWCGSEGDYNVMVMELLGPSLED 583
             I  +         +++ MEL G +L++
Sbjct: 117 SNIVKVLMIEQGASLSLITMELCGTTLQN 145


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +2

Query: 563 LGPSLEDLFNFCSRRFSLK 619
           +G ++EDL +FC + +++K
Sbjct: 452 MGETIEDLLHFCRQMYAMK 470


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 167 SCCRDYLSKFSVK 129
           +CCR +LSKF  +
Sbjct: 399 NCCRSWLSKFPTR 411


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 167 SCCRDYLSKFSVK 129
           +CCR +LSKF  +
Sbjct: 399 NCCRSWLSKFPTR 411


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 181 FVCI*AVVEIILVNFL*KNLY 119
           F+CI  V  I+L+ F+ +N+Y
Sbjct: 402 FLCISLVYIIMLIIFIPRNIY 422


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 512 LQEFQLFLALVCKICFLCVTVD 447
           L+EFQ+ L  V  IC +  ++D
Sbjct: 19  LEEFQIGLRAVVPICRIETSID 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,083
Number of Sequences: 438
Number of extensions: 4012
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)