Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30b06
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    29   0.47 
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    27   2.5  
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    27   3.3  
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ...    26   5.8  
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr...    26   5.8  
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss...    25   7.6  

>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
 Frame = +2

Query: 386 KRPPVQLSVEEIEARELLQKEWARYKRDEYMNNIAQVDRI----MAAQRRALDRL-YEES 550
           K  P  L V++ +  ELL   + R +R +Y  ++AQVD +    + A+ R + R+ Y + 
Sbjct: 319 KEMPDLLKVQK-QVVELLPGAYVRIRRGKYAGDLAQVDNLSENGLTARVRIVPRIDYSDG 377

Query: 551 EDLYNEAIMPDLQL 592
               N A  P  +L
Sbjct: 378 LKRKNSATRPQARL 391


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 22/72 (30%), Positives = 35/72 (48%)
 Frame = +2

Query: 323 QLKPIDELEVPLHLMDSLKKYKRPPVQLSVEEIEARELLQKEWARYKRDEYMNNIAQVDR 502
           ++K ID+L +   ++DS KK K P  QL+  +IE    L K    Y +D +  N++    
Sbjct: 160 EIKNIDDLGLKQRILDSYKKQK-PSGQLTSMQIE----LAKAMFNY-QDVFFTNMSMKSH 213

Query: 503 IMAAQRRALDRL 538
            +     AL  L
Sbjct: 214 KLGTSLLALHAL 225


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 314 NARQLKPIDELEVPLHLMDSLKKYKRP-PVQ 403
           N   +   DEL+V   L + LK YK P P+Q
Sbjct: 162 NLLPILQFDELDVSAKLREGLKNYKEPTPIQ 192


>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 266

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = +2

Query: 350 VPLHLMDSLKKYKRPPVQLSVEEIEARELLQKEWARYKRDEYMNNIAQVDRIMAAQRRAL 529
           +P    DS   ++ PPV  ++    ++EL+ KE+AR    +++ N    D+I+     AL
Sbjct: 197 LPKASSDSAGSFE-PPVISNI----SKELINKEYARNVLLQFLENHEHRDKILPILSTAL 251

Query: 530 D 532
           D
Sbjct: 252 D 252


>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 514

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 470 HHVCNEPIPFGVARGLRFLRPTTEQEAVYI 381
           H++ +     GV  GLR L  T +Q+  YI
Sbjct: 416 HYIIDPHTAVGVETGLRCLEKTKDQDITYI 445


>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
           Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +3

Query: 537 CTR-NQRICTMKLLCPTCNYCLI 602
           C R   ++CT+ + CP+C+  LI
Sbjct: 311 CPRCKAKVCTLPIECPSCSLVLI 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,456,967
Number of Sequences: 5004
Number of extensions: 46545
Number of successful extensions: 124
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)