Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30b06
         (679 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1062 - 30043596-30043811,30044083-30044178,30044387-300444...    30   2.0  
04_04_1105 - 30942735-30942791,30943116-30943466,30943670-309437...    28   7.9  

>03_05_1062 -
           30043596-30043811,30044083-30044178,30044387-30044448,
           30044990-30045023,30045220-30046173
          Length = 453

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +1

Query: 517 ETRSGQAVRGIRGSVQ*SYYARLATTALYHKRSGSDAAHQGLRIARRR 660
           E + G AVR +  +++ + YARL     + K S  +A + G+  ARRR
Sbjct: 190 EAKGGGAVRHV--ALEATPYARLLPRVAFLKASSEEAPYVGVETARRR 235


>04_04_1105 -
           30942735-30942791,30943116-30943466,30943670-30943762,
           30943869-30944072,30944155-30944399,30945019-30945877,
           30946070-30946936,30947113-30947562
          Length = 1041

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/67 (23%), Positives = 32/67 (47%)
 Frame = +2

Query: 398 VQLSVEEIEARELLQKEWARYKRDEYMNNIAQVDRIMAAQRRALDRLYEESEDLYNEAIM 577
           V +S  + E+ E    E   +   + M++   +DRI+A    +   ++E+  ++ +E   
Sbjct: 589 VLVSTTDAESVESEHHEHCAFSPHQSMSDPPDIDRIIAGLCPSTSSVHEKPREISSEPDD 648

Query: 578 PDLQLLP 598
           PDL   P
Sbjct: 649 PDLATTP 655


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,588,954
Number of Sequences: 37544
Number of extensions: 290868
Number of successful extensions: 784
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)