Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30b06
         (679 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099916-4|AAC68778.1|  189|Caenorhabditis elegans Hypothetical ...    89   4e-18
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a...    31   0.76 
Z67884-4|CAH60753.1|  905|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z67884-3|CAA91809.2|  921|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U11280-3|AAM97952.1|  403|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U11280-2|AAK77637.1|  452|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U11280-1|AAA19436.1|  450|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AL132898-3|CAC14412.1|  346|Caenorhabditis elegans Hypothetical ...    28   5.3  
Z50027-1|CAA90331.1|  583|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ...    27   9.3  

>AF099916-4|AAC68778.1|  189|Caenorhabditis elegans Hypothetical
           protein F54C4.1 protein.
          Length = 189

 Score = 88.6 bits (210), Expect = 4e-18
 Identities = 54/195 (27%), Positives = 100/195 (51%)
 Frame = +2

Query: 95  SILRQFSRLSICPTVKFQLNRNISTTSALTFKITEQLWAEPMXXXXXIDPAIVKAXXXXX 274
           S+L   SRLS+  T   Q+++ I   S++  K  ++           IDP + K      
Sbjct: 4   SLLASLSRLSLLQTR--QIHQTIPAGSSVFMKRQKK-----------IDPEVAKQRETRR 50

Query: 275 XXXXXXXXXXXXXNARQLKPIDELEVPLHLMDSLKKYKRPPVQLSVEEIEARELLQKEWA 454
                        ++++ KP+DEL + +    ++ + +RP  +L++E+I+ R +  K++ 
Sbjct: 51  RKRLEKDIRQMQKHSKKPKPVDELTLDVKSAKNIGERRRPRTELTLEQIDERAIALKDYT 110

Query: 455 RYKRDEYMNNIAQVDRIMAAQRRALDRLYEESEDLYNEAIMPDLQLLPYTISGPVATPPI 634
           R +      + A +   + +QR+AL+ L     +LY  A+ P  + LP  + GP  TPPI
Sbjct: 111 RSRLALQQEDDAWIRGAIESQRKALNELKMLKLELYEAAVQPAAKDLPLIVQGPSLTPPI 170

Query: 635 KDYESPDGEYIDVSK 679
           ++YE+PDG+YID ++
Sbjct: 171 RNYEAPDGDYIDTTR 185


>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 192 protein.
          Length = 2957

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 440 QKEWARYKRDEYMNNIAQVDRIMAAQRRALDRLYEESEDLYNEAIMPDLQ 589
           Q++W R   ++ MN IAQV++  A  +  + +LY        +A +  LQ
Sbjct: 281 QEQWGRVGTNDLMNVIAQVEKSSAECKARIQQLYNMQRSASADAEVQQLQ 330


>Z67884-4|CAH60753.1|  905|Caenorhabditis elegans Hypothetical
           protein T14G8.3b protein.
          Length = 905

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 20/97 (20%), Positives = 50/97 (51%), Gaps = 5/97 (5%)
 Frame = +2

Query: 320 RQLKPIDELEVPLHLMDSLKKYKRPPVQLSVEEIEARELL-----QKEWARYKRDEYMNN 484
           ++ KP++     +++  ++K+ K   + L+ EE+ A + +     QKE  ++ R+E MN 
Sbjct: 597 KKTKPVEPKAKKINVALTIKETKTDNIDLNEEEVTAAKKVLGDFEQKEKEKHDREEAMNR 656

Query: 485 IAQVDRIMAAQRRALDRLYEESEDLYNEAIMPDLQLL 595
           +  +   +A +    +   E + +   +AI+ ++ +L
Sbjct: 657 LEGLLYDLAVRLEDGEEYAEYATEEEKKAILEEVAVL 693


>Z67884-3|CAA91809.2|  921|Caenorhabditis elegans Hypothetical
           protein T14G8.3a protein.
          Length = 921

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 20/97 (20%), Positives = 50/97 (51%), Gaps = 5/97 (5%)
 Frame = +2

Query: 320 RQLKPIDELEVPLHLMDSLKKYKRPPVQLSVEEIEARELL-----QKEWARYKRDEYMNN 484
           ++ KP++     +++  ++K+ K   + L+ EE+ A + +     QKE  ++ R+E MN 
Sbjct: 613 KKTKPVEPKAKKINVALTIKETKTDNIDLNEEEVTAAKKVLGDFEQKEKEKHDREEAMNR 672

Query: 485 IAQVDRIMAAQRRALDRLYEESEDLYNEAIMPDLQLL 595
           +  +   +A +    +   E + +   +AI+ ++ +L
Sbjct: 673 LEGLLYDLAVRLEDGEEYAEYATEEEKKAILEEVAVL 709


>U11280-3|AAM97952.1|  403|Caenorhabditis elegans Hypothetical
           protein T17E9.2c protein.
          Length = 403

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = +2

Query: 314 NARQLKPIDELEVPLHLMDSLKKYKRPPVQLSVEEIEARELLQKEWARY 460
           N R++K  D  +V   L  SLK+Y   PV  S EE+ A  L+ K+   Y
Sbjct: 243 NLREMKSTDVPQVFKLLTTSLKQYSLAPVYNSEEEL-AHALVPKKGVVY 290


>U11280-2|AAK77637.1|  452|Caenorhabditis elegans Hypothetical
           protein T17E9.2b protein.
          Length = 452

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = +2

Query: 314 NARQLKPIDELEVPLHLMDSLKKYKRPPVQLSVEEIEARELLQKEWARY 460
           N R++K  D  +V   L  SLK+Y   PV  S EE+ A  L+ K+   Y
Sbjct: 292 NLREMKSTDVPQVFKLLTTSLKQYSLAPVYNSEEEL-AHALVPKKGVVY 339


>U11280-1|AAA19436.1|  450|Caenorhabditis elegans Hypothetical
           protein T17E9.2a protein.
          Length = 450

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = +2

Query: 314 NARQLKPIDELEVPLHLMDSLKKYKRPPVQLSVEEIEARELLQKEWARY 460
           N R++K  D  +V   L  SLK+Y   PV  S EE+ A  L+ K+   Y
Sbjct: 290 NLREMKSTDVPQVFKLLTTSLKQYSLAPVYNSEEEL-AHALVPKKGVVY 337


>AL132898-3|CAC14412.1|  346|Caenorhabditis elegans Hypothetical
           protein Y59A8B.4 protein.
          Length = 346

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 326 LKPIDELEVPLHLMDS-LKKYKRPPVQLSVE 415
           L PI  +E+P+HL+ S +  +K PP   SV+
Sbjct: 19  LHPIAMIEIPIHLLASYIVIFKTPPTMTSVK 49


>Z50027-1|CAA90331.1|  583|Caenorhabditis elegans Hypothetical
           protein C39B10.1 protein.
          Length = 583

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 339 MSWRFHFT*WIHSKNINGLLFSCRSKKSKPASYSKR-NGLVTNVM 470
           + W F+   W+H+     +    RSK +   ++S R NGL+T V+
Sbjct: 10  IDWCFNMEMWLHTMATQNISQQMRSKYAHYKTFSYRYNGLLTLVL 54


>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
            protein Y32H12A.8 protein.
          Length = 3901

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = +2

Query: 380  KYKRPPVQLSVEEIEARELLQKEW--ARYKRDEYMNNIAQVDRIMAAQ--RRALDRLYE 544
            KY+R       +EIE  +++ K W  A  K+      + ++ R+M  +  R+ ++  YE
Sbjct: 2250 KYRRELANTEKQEIEKMKIMNKHWMPALRKKIRIARKVIEIGRLMVEEDVRKWMEYQYE 2308


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,663,092
Number of Sequences: 27780
Number of extensions: 268314
Number of successful extensions: 698
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)