Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30b06
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.7  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    23   2.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.7  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           22   4.7  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           22   4.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   8.2  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -3

Query: 482 CSYIHHVCNEPIPFGVARGLRFLRPTTEQE 393
           C+ +HH  + P  +    G+RF+   T++E
Sbjct: 467 CNTLHHWHHCPEIYKAIEGIRFIADHTKRE 496


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 537 CTRNQRICTMKLLCPTCNYC 596
           CT+NQ+   +++    C YC
Sbjct: 55  CTKNQQCSILRINRNRCQYC 74


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 537 CTRNQRICTMKLLCPTCNYC 596
           CT+NQ+   +++    C YC
Sbjct: 104 CTKNQQCSILRINRNRCQYC 123


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 428 RELLQKEWARYKRDEYMNNIA 490
           ++L+Q  WA  ++DE  + IA
Sbjct: 29  KKLVQNTWAVVRKDEVASGIA 49


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 428 RELLQKEWARYKRDEYMNNIA 490
           ++L+Q  WA  ++DE  + IA
Sbjct: 29  KKLVQNTWAVVRKDEVASGIA 49


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 426 PASYSKRNGLVTNVMNI*TTLHKSTGSWQP 515
           P  Y ++NGLV + MN+  TL K   + +P
Sbjct: 281 PRLYDRQNGLVLSRMNL--TLAKMEKTSKP 308


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +1

Query: 118 IINMSHSKISVKSKY 162
           I++MSHS+ ++ SK+
Sbjct: 210 IVHMSHSESTIDSKF 224


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,585
Number of Sequences: 438
Number of extensions: 3252
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)