Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30b05
         (136 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    24   3.2  
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    23   4.2  
SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    23   7.3  
SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces po...    23   7.3  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    22   9.7  

>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 5   LIENFVCDATLVGKSLHFYIN 67
           LI     D+++VGKSL  Y++
Sbjct: 261 LISRLTTDSSIVGKSLSMYLS 281


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +2

Query: 11  ENFVCDATLVGKSLHFYINFFFT*SNSRKCLFNIRFGGI 127
           +N V     VGK  + Y + FF   NSR       F GI
Sbjct: 415 DNNVTTNVCVGKEWYRYPSTFFLPDNSRLKFVKSEFDGI 453


>SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = -2

Query: 102 KHFREFDHVKKKL 64
           KH+ E+D++K+KL
Sbjct: 159 KHYAEYDNLKQKL 171


>SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 236

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = -2

Query: 102 KHFREFDHVKKKL 64
           KH+ E+D++K+KL
Sbjct: 159 KHYAEYDNLKQKL 171


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 63  LIFFLHDQILESVYLIF 113
           L+F   D+ L SVYLI+
Sbjct: 581 LVFSADDEYLASVYLIY 597


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 588,686
Number of Sequences: 5004
Number of extensions: 7740
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 2,362,478
effective HSP length: 25
effective length of database: 2,237,378
effective search space used: 42510182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)