Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30b05
         (136 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1482 - 27428208-27428514,27428605-27428906,27431176-274322...    26   3.7  
04_03_0809 + 19896801-19897170,19897265-19897513,19897850-198979...    26   4.9  
03_02_0048 - 5265595-5265783,5265882-5265992,5266259-5266547,526...    25   6.4  

>08_02_1482 -
           27428208-27428514,27428605-27428906,27431176-27432228,
           27432305-27432421,27432510-27432843,27433064-27433188,
           27433408-27433475,27433555-27433636,27433753-27433866,
           27433942-27434042,27434145-27434234,27434615-27434819
          Length = 965

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -2

Query: 123 PPNRILNKHFREFDHVKKKLI*KCNDFPTRVASHTKFS 10
           PPN IL    R FD V++ L  + ND P+ V   ++FS
Sbjct: 669 PPNEILKHTPRRFDKVRRSLYPE-NDNPSSV-DRSEFS 704


>04_03_0809 +
           19896801-19897170,19897265-19897513,19897850-19897900,
           19898007-19898267,19898427-19898479,19898746-19898887,
           19898972-19899226,19899616-19900640
          Length = 801

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 15  ISCVMQLL*ENHCIFILIFFLHDQILESVYL 107
           ++ VM L+ + H +FIL+F+      E VYL
Sbjct: 475 MTVVMLLIWKKHLVFILLFYCVFGFTEVVYL 505


>03_02_0048 -
           5265595-5265783,5265882-5265992,5266259-5266547,
           5266647-5266903,5266995-5267356,5267447-5267522,
           5267618-5267707,5267800-5267891,5267995-5268098,
           5268191-5268253,5268609-5268736
          Length = 586

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 120 PNRILNKHFREFDHVKKKL 64
           PN + +K   EFDHVKK L
Sbjct: 161 PNAVDSKILGEFDHVKKGL 179


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,413,502
Number of Sequences: 37544
Number of extensions: 38785
Number of successful extensions: 49
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 14,793,348
effective HSP length: 25
effective length of database: 13,854,748
effective search space used: 263240212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)