Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30b05
         (136 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83230-5|CAB05745.1|  304|Caenorhabditis elegans Hypothetical pr...    27   1.8  
U23526-2|AAK95867.1|  281|Caenorhabditis elegans Claudin-like in...    25   7.4  
AF252605-1|AAF67351.1|  281|Caenorhabditis elegans Gas3/PMP22-li...    25   7.4  

>Z83230-5|CAB05745.1|  304|Caenorhabditis elegans Hypothetical
           protein F56A8.5 protein.
          Length = 304

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 44  KSLHFYINFFFT*SNSRKCLFNIRFGGIKKK 136
           K+L+ Y+ FF    N+ +C+  ++F   KK+
Sbjct: 40  KTLNLYVEFFSVEINNNRCVIRLKFFYSKKE 70


>U23526-2|AAK95867.1|  281|Caenorhabditis elegans Claudin-like in
           caenorhabditisprotein 5 protein.
          Length = 281

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +3

Query: 51  CIFILIFFLHDQILESVYLI 110
           C+ +++F ++ ++LES YLI
Sbjct: 151 CVSLIVFMVNAEMLESKYLI 170


>AF252605-1|AAF67351.1|  281|Caenorhabditis elegans Gas3/PMP22-like
           protein protein.
          Length = 281

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +3

Query: 51  CIFILIFFLHDQILESVYLI 110
           C+ +++F ++ ++LES YLI
Sbjct: 151 CVSLIVFMVNAEMLESKYLI 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,322,007
Number of Sequences: 27780
Number of extensions: 44338
Number of successful extensions: 120
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 12,740,198
effective HSP length: 25
effective length of database: 12,045,698
effective search space used: 228868262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)