Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30b04
         (742 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    25   0.49 
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    25   0.85 

>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -2

Query: 432 WIEHENTCLHHVHSRGPCPSVRRLVSSW 349
           W+     CLH  HS G    V   V+SW
Sbjct: 6   WVNLALFCLHVQHSHGATDKVICYVASW 33


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 16/66 (24%), Positives = 29/66 (43%)
 Frame = +3

Query: 207 FIRKRSETDAPRYTARLKTYVDFQRKRDRATAARRNHTAGHHDKIMAAKKKPDDEQKDKG 386
           +I+  ++ +AP   +R      F RKR   ++   N   G H     A +  +D Q  + 
Sbjct: 45  YIKVEADEEAPVLKSR-----SFGRKRKSISSDEENSFQGKHKSRRKAPQSFEDIQHQRV 99

Query: 387 LENARD 404
           + N R+
Sbjct: 100 MANVRE 105


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,203
Number of Sequences: 336
Number of extensions: 1888
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)