Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30b04
         (742 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006712-10|AAK39322.2|  273|Caenorhabditis elegans Hypothetical...    30   2.0  
Z49911-11|CAA90135.2|  452|Caenorhabditis elegans Hypothetical p...    28   6.0  
Z36948-6|CAA85414.2|  452|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U70856-1|AAB09165.1|  327|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z71181-3|CAA94896.1|  493|Caenorhabditis elegans Hypothetical pr...    28   8.0  
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p...    28   8.0  
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr...    28   8.0  

>AC006712-10|AAK39322.2|  273|Caenorhabditis elegans Hypothetical
           protein Y119C1B.1 protein.
          Length = 273

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/57 (22%), Positives = 29/57 (50%)
 Frame = +3

Query: 213 RKRSETDAPRYTARLKTYVDFQRKRDRATAARRNHTAGHHDKIMAAKKKPDDEQKDK 383
           R+RS +++ +    +K+    + KRDR T+ R   ++   +K+     K   ++K +
Sbjct: 39  RRRSSSNSKKSKKSMKSRKSMKSKRDRRTSERERKSSRDRNKVSRRSMKSSRDRKSR 95


>Z49911-11|CAA90135.2|  452|Caenorhabditis elegans Hypothetical
           protein D2089.1a protein.
          Length = 452

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +3

Query: 213 RKRSETDAPRYTARLKTYVDFQRKRDRATAARRNHTAGHHDKIMAAKKKPDDEQKDKGLE 392
           RKRS +   +  +R +   D  RKR R+   RR  +     K   ++ +  D ++DK   
Sbjct: 322 RKRSRSRDRKRRSRSRDNKDRDRKRSRS-RDRRRRSKSRDRKRERSRSRSKDRKRDKKRS 380

Query: 393 NARDGDK 413
            +R  +K
Sbjct: 381 RSRSPEK 387


>Z36948-6|CAA85414.2|  452|Caenorhabditis elegans Hypothetical
           protein D2089.1a protein.
          Length = 452

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +3

Query: 213 RKRSETDAPRYTARLKTYVDFQRKRDRATAARRNHTAGHHDKIMAAKKKPDDEQKDKGLE 392
           RKRS +   +  +R +   D  RKR R+   RR  +     K   ++ +  D ++DK   
Sbjct: 322 RKRSRSRDRKRRSRSRDNKDRDRKRSRS-RDRRRRSKSRDRKRERSRSRSKDRKRDKKRS 380

Query: 393 NARDGDK 413
            +R  +K
Sbjct: 381 RSRSPEK 387


>U70856-1|AAB09165.1|  327|Caenorhabditis elegans Hypothetical
           protein F57F4.2 protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/48 (37%), Positives = 22/48 (45%)
 Frame = +3

Query: 324 GHHDKIMAAKKKPDDEQKDKGLENARDGDKCXXXXXXXXXXXGEPLDR 467
           G   K+  AKK  DD Q+ KG   +RDGD+            G PL R
Sbjct: 89  GGPGKLYRAKK--DDGQEKKGDPQSRDGDEGEEEGSDKKEKKGNPLKR 134


>Z71181-3|CAA94896.1|  493|Caenorhabditis elegans Hypothetical
           protein K07C5.3 protein.
          Length = 493

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +3

Query: 270 DFQRKRDRATAARRNHTAGHHDKIMAAKKKPDDEQKDKGLENAR-DGDK 413
           DF++   + T++ +N  A    K    +++ DDE+ D  + N+  +GD+
Sbjct: 354 DFEKSAQQKTSSSKNKVAEPSFKKSKRQEESDDEESDVEMSNSESEGDQ 402


>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
            protein 44, isoform f protein.
          Length = 6994

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 236  SSVHRQAQDLCRLSEKARPCDGRSAQPH 319
            S +H Q +D+ +   ++ P D +S QPH
Sbjct: 3972 SPIHSQKEDISQFQNESSPEDVKSEQPH 3999


>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
            protein.
          Length = 6994

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 236  SSVHRQAQDLCRLSEKARPCDGRSAQPH 319
            S +H Q +D+ +   ++ P D +S QPH
Sbjct: 3972 SPIHSQKEDISQFQNESSPEDVKSEQPH 3999


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,609,256
Number of Sequences: 27780
Number of extensions: 189856
Number of successful extensions: 608
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)