Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30b01
         (737 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   1.7  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   6.9  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.1  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   9.1  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +2

Query: 557 NWWEDDYESDLSQISLEKDEDKISEDIMKSRYFIDM 664
           +W  D Y  DL  ++  +D ++I   I  + Y+I +
Sbjct: 165 SWTYDGYTVDLRHLAQTEDSNQIEVGIDLTDYYISV 200


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 215 EASECLHNNLQVQKKKYMQELIKTVENRIIEIKNELQNLECSQCH-FVGNG 364
           +++ CL    Q ++KK + + +K + N    I +   NL+C +C  +  NG
Sbjct: 113 KSNVCLKFEEQKRRKKSLDD-VKILRND--RIDSYKSNLKCDKCSTYQSNG 160


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 140 AHDKQLCEAVLRLSSVLARYSALYNEASEC 229
           AH+K + E   +++    R S   N ++EC
Sbjct: 245 AHEKNMREQAKKMNVASLRSSENQNTSAEC 274


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 140 AHDKQLCEAVLRLSSVLARYSALYNEASEC 229
           AH+K + E   +++    R S   N ++EC
Sbjct: 121 AHEKNMREQAKKMNVASLRSSENQNTSAEC 150


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,252
Number of Sequences: 438
Number of extensions: 3522
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)