Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30a23
         (142 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    26   0.59 
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    25   1.4  
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    24   2.4  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    24   3.2  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    24   3.2  
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces...    23   7.3  
SPAPJ760.03c |adg1||sequence orphan|Schizosaccharomyces pombe|ch...    23   7.3  
SPBP23A10.03c |||ACN9 family mitochondrial protein|Schizosacchar...    22   9.6  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    22   9.6  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    22   9.6  

>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 26.2 bits (55), Expect = 0.59
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 14  DSFSDLLHSINAQSVSTVYNLLRPKYASPEEISKSRVESS 133
           D+FS  +  +N   ++ +YN  RP  A   + SKS V  S
Sbjct: 160 DNFSVRIQELNVVDIAMLYNSSRPSLAVLYKDSKSIVHLS 199


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 26  DLLHSINAQSVSTVYNLLRPKYASPEEISK 115
           D L  + +Q VST+Y+LL+ K    + + K
Sbjct: 203 DALLFVKSQMVSTIYDLLKAKPEQEQNLLK 232


>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 23  SDLLHSINAQSVSTVYNLLRPKYASPEEISK 115
           +D+L+S    S   + NL+R +  SPE+I K
Sbjct: 540 ADVLNSAFHLSYGMILNLMRIEEISPEDILK 570


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 41  INAQSVSTVYNLLRPKYASPEEIS 112
           IN Q+VST+ NLL+ K +  + I+
Sbjct: 799 INYQTVSTLNNLLKSKMSEADIIA 822


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 28  SFALNKRTKCKHGIQFIKTEIRIARRNFEIAC 123
           SF+     K K  +Q ++ E  IAR  + I C
Sbjct: 624 SFSQETEKKYKFLLQTVRNETEIARELYNIIC 655


>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 815

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 65  VYNLLRPKYASPEEISKSRVE 127
           +YNL++ +++  E+I KSR E
Sbjct: 333 LYNLMKERFSYFEKIIKSRQE 353


>SPAPJ760.03c |adg1||sequence orphan|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 166

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 41 INAQSVSTVYNLLRP 85
          + +Q V TVYN+L+P
Sbjct: 50 VTSQPVVTVYNVLKP 64


>SPBP23A10.03c |||ACN9 family mitochondrial
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 115

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 17  SFSDLLHSINAQSVSTVYNL 76
           S +DLL S+N Q +  +Y L
Sbjct: 85  SNTDLLESLNDQQIGQLYEL 104


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 14  DSFSDLLHSINAQSVSTVYNLLR 82
           D   DLL S++ + V  VYN +R
Sbjct: 43  DLIRDLLASLSKEGVVAVYNHVR 65


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 29  LLHSINAQSVSTVYNLLRPKYASPEEISKSRVE 127
           LLHS+  ++ S    L R + ASPE  S  R++
Sbjct: 559 LLHSLMGRATSMFQMLDRVRRASPELGSVIRLQ 591


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 613,425
Number of Sequences: 5004
Number of extensions: 8016
Number of successful extensions: 42
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 27
effective length of database: 2,227,370
effective search space used: 42320030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)