Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30a23
         (142 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0354 - 33333634-33333840,33334106-33334213,33335384-333355...    28   0.91 
04_03_0395 - 15356255-15356292,15356507-15356620,15356728-153568...    27   2.8  
04_03_0332 + 14535793-14535921,14536003-14537037                       27   2.8  
06_03_1186 - 28260487-28262112,28262205-28262345,28262429-282625...    26   3.7  
06_03_0726 + 23904350-23904964,23905986-23906021,23906158-239062...    26   3.7  
05_01_0505 + 4207841-4208455,4209982-4210143,4210247-4210717           25   8.4  

>03_06_0354 -
           33333634-33333840,33334106-33334213,33335384-33335557,
           33335637-33335765,33335858-33336145,33336257-33336489,
           33336607-33337435
          Length = 655

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 43  KRTKCKHGIQFIKTEIRIARRNFEIACGI 129
           +R++C H I     E R+  R  E+ CG+
Sbjct: 148 ERSRCPHSIVLTGDEFRVKGRTVELPCGL 176


>04_03_0395 -
           15356255-15356292,15356507-15356620,15356728-15356809,
           15356862-15357236,15357256-15357320,15357534-15357662,
           15357759-15357854,15357959-15357983
          Length = 307

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 102 SGDAYFGLNKLYTVLTLCAFIECKRSENESSYI 4
           SG+ +FG+N +YT ++LC  +    S   S YI
Sbjct: 133 SGEVHFGVNDIYT-MSLCN-VALSASPESSKYI 163


>04_03_0332 + 14535793-14535921,14536003-14537037
          Length = 387

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 102 SGDAYFGLNKLYTVLTLCAFIECKRSENESSYI 4
           SG+ +FG+N +YT ++LC  +    S   S YI
Sbjct: 138 SGEVHFGVNDIYT-MSLCN-VALSASPESSKYI 168


>06_03_1186 -
           28260487-28262112,28262205-28262345,28262429-28262573,
           28262964-28263067,28263324-28263456,28263904-28264013,
           28265144-28265167
          Length = 760

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 19  IFGSFALNK-RTKCKHGIQFIKTEIRIARR 105
           +FGS   +K   KCKH  + I+T + + RR
Sbjct: 32  MFGSLLNSKFYNKCKHAFKCIRTRLALIRR 61


>06_03_0726 +
           23904350-23904964,23905986-23906021,23906158-23906256,
           23906445-23906627,23907016-23907105,23907187-23907285,
           23907584-23907688,23907786-23907926,23908009-23908296,
           23908536-23908826
          Length = 648

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 11  EDSFSDLLHSINAQSVSTVYNLLRPKYASPEE 106
           +D F D  HS N + +  VY L + + ++ E+
Sbjct: 318 DDEFRDSFHSRNQKGIRAVYTLEKDRLSNNED 349


>05_01_0505 + 4207841-4208455,4209982-4210143,4210247-4210717
          Length = 415

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 16  LIFGSFALNKRTKCKHGIQFIKTEIRIAR 102
           L+ G+FA    T C + ++ IKT + I R
Sbjct: 232 LVAGAFAGVSSTLCTYPLELIKTRLTIQR 260


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,615,762
Number of Sequences: 37544
Number of extensions: 44425
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 14,793,348
effective HSP length: 27
effective length of database: 13,779,660
effective search space used: 261813540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)