Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30a18
(621 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1443 + 26575172-26575181,26575709-26575805,26575900-265759... 259 1e-69
01_01_1232 - 9966448-9966708,9966818-9966928,9967142-9967176,996... 141 5e-34
04_04_0108 - 22830485-22830706,22830817-22830954,22831091-228313... 32 0.32
07_01_1046 - 9138000-9138293,9139550-9139714,9139862-9140010,914... 30 1.3
10_08_0036 + 14325793-14326457,14326610-14328035 29 3.0
01_05_0329 - 21037980-21038378,21038517-21038737,21038827-210389... 29 3.9
04_03_0916 + 20794240-20794246,20794585-20796545 28 5.2
11_01_0438 - 3349506-3351239 28 6.9
04_03_0914 + 20788103-20789642,20790036-20790529 28 6.9
04_04_0861 + 28836544-28836609,28838191-28838264,28838551-288386... 27 9.1
>07_03_1443 +
26575172-26575181,26575709-26575805,26575900-26575985,
26576073-26576117,26576788-26576918,26577016-26577126,
26577215-26577472
Length = 245
Score = 259 bits (634), Expect = 1e-69
Identities = 118/158 (74%), Positives = 138/158 (87%)
Frame = +3
Query: 147 MAVRVQFENNNEVGVFSKLTNTYCLVAIGGSENFYSVFEAELAETIPVIHASVGGCRIIG 326
MA R+QFENN EVGVFSKLTN YCLVAIGGSENFYS FE+ELA+ IPV+ S+GG RIIG
Sbjct: 1 MATRIQFENNCEVGVFSKLTNAYCLVAIGGSENFYSAFESELADVIPVVKTSIGGTRIIG 60
Query: 327 RMTVGNKNGLLVPSSTTDTELQHIRNSLPENVKLQRVEERLSALGNVIACNDYVALVHPD 506
R+ VGNKNGLL+P +TTD ELQH+RN LP+ V +QR++ERLSALGN +ACND+VAL HPD
Sbjct: 61 RLCVGNKNGLLLPHTTTDQELQHLRNCLPDQVVVQRIDERLSALGNCVACNDHVALTHPD 120
Query: 507 LDKDTEEILADTLNVEVFRQTIAGNVLVGSYTALSNRG 620
LDK TEE++AD L VEVFRQTIAGN+LVGSY A++NRG
Sbjct: 121 LDKATEELIADVLGVEVFRQTIAGNILVGSYCAITNRG 158
>01_01_1232 -
9966448-9966708,9966818-9966928,9967142-9967176,
9967469-9967599,9967683-9967779,9967907-9967916
Length = 214
Score = 141 bits (341), Expect = 5e-34
Identities = 74/169 (43%), Positives = 113/169 (66%), Gaps = 13/169 (7%)
Frame = +3
Query: 147 MAVRVQFENNNEVGVFSKLTNTYCLVAIGGSENFYSVFEAELAETIPVIHASVGGCRIIG 326
MA RV+FEN++E+GVF++LTN YC++ GG+ENF+SVFE+ELA+ +PV+ S+GG RIIG
Sbjct: 1 MASRVRFENSSEIGVFARLTNAYCVLPDGGAENFFSVFESELADVVPVVRTSIGGTRIIG 60
Query: 327 RMTVGNKNGLLVPSSTTDTELQHIRNSLPENVKLQRVEE-------RLSALGNVI----- 470
RM VGNKNGLL+P +TTD ELQH++NSLP+ + + + R + GN++
Sbjct: 61 RMCVGNKNGLLLPHTTTDQELQHLKNSLPDQGTEEIISDVLGVEVFRQTIAGNILVGSFC 120
Query: 471 ACNDYVALVHPDLDKDTEEILADTLNVEVFRQTI-AGNVLVGSYTALSN 614
A ++ LVHP + + L+ L V + +I G+ +V + A+++
Sbjct: 121 AFSNKGGLVHPQTSVEDQAELSTLLEVPLAAGSINRGSEVVAAGMAVND 169
Score = 59.3 bits (137), Expect = 2e-09
Identities = 26/37 (70%), Positives = 32/37 (86%)
Frame = +3
Query: 510 DKDTEEILADTLNVEVFRQTIAGNVLVGSYTALSNRG 620
D+ TEEI++D L VEVFRQTIAGN+LVGS+ A SN+G
Sbjct: 90 DQGTEEIISDVLGVEVFRQTIAGNILVGSFCAFSNKG 126
>04_04_0108 -
22830485-22830706,22830817-22830954,22831091-22831355,
22831490-22831725,22831906-22832421,22834960-22835300,
22835453-22835459
Length = 574
Score = 32.3 bits (70), Expect = 0.32
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 4/120 (3%)
Frame = +3
Query: 174 NNEVGVFSKLTNTYCLVAIGGSENFYSVFEAELAETIPVIHASVGGCRIIGRMTVGNKNG 353
NNE+ FS NT NF + L+ P I G + VG G
Sbjct: 413 NNEMDDFSMPANTSANSPPPAPANFVRPLKRPLSSMTPTIILKDGNLKA----AVGASGG 468
Query: 354 LLVPSSTTDTELQH-IRNSLP-ENVKLQRVEERLSALGNVIACNDYVALV--HPDLDKDT 521
++P+ T + L H ++N P +V RV +L + NV+ ++ + H +LD T
Sbjct: 469 SMIPAGTMEVLLNHFVKNMDPLSSVMAPRVYHQL--IPNVVQYENWTTVTGDHFELDAAT 526
>07_01_1046 -
9138000-9138293,9139550-9139714,9139862-9140010,
9140363-9140510,9140659-9140727,9140827-9141087,
9141498-9141692,9142932-9143048,9143701-9144477
Length = 724
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/86 (23%), Positives = 41/86 (47%)
Frame = +3
Query: 87 ESHHIVKYIIREKVKRKTKIMAVRVQFENNNEVGVFSKLTNTYCLVAIGGSENFYSVFEA 266
E+HH++ YII + K+ + ++ E F + + +C++A + N S+F+
Sbjct: 241 EAHHLI-YIIGWSLYHPVKLDGL--MHTHDEEARKFFRHSGVHCVLAPRYASNKLSIFKQ 297
Query: 267 ELAETIPVIHASVGGCRIIGRMTVGN 344
++ T+ H C I+ +GN
Sbjct: 298 QVVGTLFTHHQK---CVIVDTQVIGN 320
>10_08_0036 + 14325793-14326457,14326610-14328035
Length = 696
Score = 29.1 bits (62), Expect = 3.0
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Frame = +3
Query: 216 CLVAIGGSENFYSVFEAELAETIPVIHASVGGCRIIGRMTVGNKNGLLVPSSTTDTELQH 395
CL A G + L I ++ ++ R IG T N + + V + D E Q
Sbjct: 408 CLSASGDHQLHRLDSRQGLLAGIAQVNKAIKDARHIGDRT-SNIDVIKVQAGNLDEEAQR 466
Query: 396 IRNSLPENVKLQRVEERLSALGN----VIACNDYVALVHPDLDKDTEEILADTLNVE 554
I+ +P N + VE LGN + A +Y ++ D D+ EI+ +N E
Sbjct: 467 IQELVPSNFNIIGVEVMHPQLGNRSYAIGAQQNYESMKTYLKDADSFEIVIAFVNSE 523
>01_05_0329 -
21037980-21038378,21038517-21038737,21038827-21038905,
21039002-21039071,21039144-21039255,21039359-21039398,
21039482-21039676,21039925-21040044,21040684-21041106,
21042386-21042928
Length = 733
Score = 28.7 bits (61), Expect = 3.9
Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 1/98 (1%)
Frame = +3
Query: 84 EESHHIVKYIIREKVKRKTKIMAVRVQFENNNEVGVFSKLTNTYCLVAIGGSENFYSVFE 263
E+ H +++ R K++ + E N VFS T+C + I S N + +
Sbjct: 475 EQQRHTFQFVSRNKLEVPVRHKKAPDALEMNTNSVVFSPKEQTHCNLEI-FSPNSKKIID 533
Query: 264 AELAETIPVIHA-SVGGCRIIGRMTVGNKNGLLVPSST 374
A E+ + +G C++ + ++ + PS T
Sbjct: 534 ASHYESYASLQQHPLGQCQVPNYWSAAGQSSFVHPSIT 571
>04_03_0916 + 20794240-20794246,20794585-20796545
Length = 655
Score = 28.3 bits (60), Expect = 5.2
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +3
Query: 300 SVGGCRIIGRMTVGNKNGLLVPSSTTDTELQHIRNSLPENVKLQRVEERLSALGNVIAC 476
S GGC + + + SS TD E HIR + E + Q V +R +G + AC
Sbjct: 244 SNGGCSVWHNELLNIRKNQCTGSSNTDGETFHIRLAAQE-LYSQEVNKRGMVIGVLSAC 301
>11_01_0438 - 3349506-3351239
Length = 577
Score = 27.9 bits (59), Expect = 6.9
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Frame = +3
Query: 258 FEAELAETIPVIHASVGGCRIIGRMTVGNKN---GLLVPSSTTDTELQHIRNSLPE--NV 422
FE A TIP ++ S +GR+ VG N G + + T TEL + LP +
Sbjct: 400 FEVLAASTIPRMYHSSATLDTLGRVLVGGSNPHVGYVFDNVTYPTELS-LEAFLPPYFDA 458
Query: 423 KLQRVEERLSALGNVIACNDYVAL 494
+L V RL A + + + A+
Sbjct: 459 RLDGVRPRLVAAPSEVGYGEAAAV 482
>04_03_0914 + 20788103-20789642,20790036-20790529
Length = 677
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +3
Query: 300 SVGGCRIIGRMTVGNKNGLLVPSSTTDTELQHIRNSLPENVKLQRVEERLSALGNVIACN 479
S GGC I + + SS TD E HIR + E + ++ +R+ +G VI+ +
Sbjct: 398 SNGGCSIWHNELLNIRKSQCSDSSNTDGEALHIRLA-AEELYSKKANKRVMVIGVVISAS 456
>04_04_0861 +
28836544-28836609,28838191-28838264,28838551-28838671,
28838832-28839143,28839241-28839345,28839447-28839901,
28840116-28840417,28840589-28840767,28841256-28841446,
28841595-28841728,28841875-28842113
Length = 725
Score = 27.5 bits (58), Expect = 9.1
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = -3
Query: 442 SSTRCNFTFSGRLFLMCCNSVS-VVEDGT--KRPFLFPTVILPMIRQPPTLACITGMVSA 272
SS T++G L +++ VV D T +L P ++L + PP + CI +V+
Sbjct: 658 SSRLARGTYNGGLLSTEAGTLARVVADATITAAGYLGPDLLLNITLLPPLVICIASLVAT 717
Query: 271 NSASNTL 251
NTL
Sbjct: 718 FCTYNTL 724
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,660,189
Number of Sequences: 37544
Number of extensions: 346972
Number of successful extensions: 921
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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