Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30a17
         (113 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               20   3.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    19   5.6  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    19   7.4  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    19   7.4  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    19   7.4  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    18   9.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    18   9.7  

>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 57 FLFQLNXVWLYFGE 16
          F+  +  ++LYFGE
Sbjct: 9  FILVITLIFLYFGE 22


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 103 EAVRNDGRHVYGXINVFVSI 44
           EA+R DG  +     VF SI
Sbjct: 529 EAIRLDGNFLSDINGVFTSI 548


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 14  NSPKYNHTLFN*NKNVY 64
           N+ KYN+   N N N Y
Sbjct: 92  NNYKYNYNNNNYNNNNY 108


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 14  NSPKYNHTLFN*NKNVY 64
           N+ KYN+   N N N Y
Sbjct: 92  NNYKYNYNNNNYNNNNY 108


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 14  NSPKYNHTLFN*NKNVY 64
           N+ KYN+   N N N Y
Sbjct: 327 NNYKYNYNNNNYNNNNY 343


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 17  SPKYNHTLFN*NKNVYXPVNM 79
           SPK    LF  +KN+   V M
Sbjct: 757 SPKIYIILFQPDKNIRRKVTM 777


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 17  SPKYNHTLFN*NKNVYXPVNM 79
           SPK    LF  +KN+   V M
Sbjct: 847 SPKIYIILFQPDKNIRRKVTM 867


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,298
Number of Sequences: 438
Number of extensions: 318
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 18
effective length of database: 138,459
effective search space used:  2630721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)