Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30a14
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    29   0.91 
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    28   1.2  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    28   1.6  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    28   1.6  
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    28   1.6  
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    27   2.1  
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo...    27   3.7  
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces...    26   4.8  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    26   4.8  
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    26   6.4  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   8.5  
SPBC839.12 |rpc31||DNA-directed RNA polymerase III complex subun...    25   8.5  
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.5  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    25   8.5  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    25   8.5  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    25   8.5  

>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 259 IKAFQQHIRVNFIFIHPSVLR 197
           IK+F  H++ NF F H ++LR
Sbjct: 265 IKSFYGHVQANFFFFHETLLR 285


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +2

Query: 353 KKQVFECEKKFIDMVARGEFRKVLIYQAHMKSEEVGPE--DEIPADESEYLEEDPD 514
           +KQVF C   FID     +F  +       K++EV  +  D + +DE E   E+ D
Sbjct: 475 RKQVFHCFLSFIDSYNEEDFSYLSDIGITEKTQEVSSKLPDVLSSDEEEDSAENKD 530


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 287 PNGPNRLICEVCITRLRDACNF 352
           P+  +   C  C+ RLR  CNF
Sbjct: 462 PDSTSHASCTYCVARLRSVCNF 483


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +2

Query: 431 QAHMKSEEVGPEDEIPADESEYLEEDPDFGDDEPLKREEPQPTVSA 568
           +++ + E+V  E+E   DE+    +D D  +++ L+ E   P  SA
Sbjct: 242 ESYERDEDVDEEEEEDDDENNDEGDDEDENENDELRSENGSPNPSA 287


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +2

Query: 335 RDACNF--KKQVFECEKKFIDMVARGEFRK 418
           ++  NF  K +VF+ E  FI  + RGEF+K
Sbjct: 435 KEGLNFTGKARVFDAENDFIAALERGEFKK 464


>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -2

Query: 212 SKCTQNLNLCSTLQKDSTGKGRDSPSPQYRQTPSLYHDSNITI 84
           S    N  + S   + S+      PS + R TP+  HDS +TI
Sbjct: 294 SPAATNSAISSPFVRKSSSDLEAKPSKKQRSTPAFSHDSPLTI 336


>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 603 QRNNQMPSLRKRNQIRTTRKLNL*QKEN 686
           +RNN+  + + RNQ+R  +K  L +K N
Sbjct: 35  ERNNKQKNKKSRNQVRREKKKLLREKTN 62


>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +2

Query: 395 VARGEFRKVLIYQAHMKSEEVGPEDE---IPADESEYLEEDPDFGDDEPLKREEP 550
           +A   F   + Y     +EE   EDE   +  DE E  EED + GD+E  K+E P
Sbjct: 185 LAEDLFPNAVKYFTEAMTEEASDEDESVDLEEDEEEEDEEDEE-GDEE--KQEPP 236


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 23/74 (31%), Positives = 33/74 (44%)
 Frame = -1

Query: 408 SPLATMSMNFFSHSNTCFLKLHASRSLVMQTSQISLFGPFGPSFICDILISKHSNSISA* 229
           SP+      F   +NT FL+L  S S   Q S +  F P  P     I +++ S   SA 
Sbjct: 697 SPIGDRKPAFMRRANTDFLELSTSPS--FQRS-VREFEPTRPKLYSSIDVNQRSPLASAK 753

Query: 228 TSFSFIQVYSEPKS 187
           T+ +F      P+S
Sbjct: 754 TNGNFTFHAELPRS 767


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +2

Query: 473 IPADESEYLEEDPDFGDDEPLKREEPQPTVSAEPLQIKGKR 595
           +P+ ESE  EE+ D    EP   EE      A  +  KG +
Sbjct: 223 VPSSESEVSEEESDQEMSEPSPIEEDYNDTKARRITRKGTK 263


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -2

Query: 569  QQIPLVEAPLVSMARRLRSRDPLLDTQIHQLVFRLRGQLLQISC 438
            Q +P++E PL+     L + D ++DT I   V + R  +L   C
Sbjct: 1586 QSVPMLENPLMGSEINLEALDQIIDT-IDVNVVKERRNVLNSLC 1628


>SPBC839.12 |rpc31||DNA-directed RNA polymerase III complex subunit
           Rpc31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +2

Query: 446 SEEVGPEDEIPADESEYLEEDPDFGDDE 529
           SE   P  E   DE    EED DFGDD+
Sbjct: 155 SEAAHPNIEEEPDEG-LEEEDEDFGDDD 181


>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -2

Query: 101 DSNITITNKVPYVTMTVFKPN*QADSRTTILLY 3
           DSN+ ITN+V  +T+ +F    +++ R   +L+
Sbjct: 302 DSNLAITNEVGEMTLRIFCLKKKSNKRLLAILW 334


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 462 PKTKYQLMNLSI*KRIPTSETTSH*NER-SLNQRYLLSPYRSKGNVADQRNN 614
           PK+K  L N    K I + + + H  E  SLN +  + PY+ +  V+  R N
Sbjct: 747 PKSKINLNNS---KGIWSKDASKHHREIISLNVKQKMDPYKHQNKVSKAREN 795


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -2

Query: 254 SIPTAYPRKLHFHSSKCTQNLNLCSTLQKDSTGKGRDSPSPQYRQTPS 111
           S PTA P   H++SS       L  T ++ S   G+D+PSP  +   S
Sbjct: 235 STPTA-PDFPHYNSSPS----ELSPTQRRSSISNGKDAPSPVLKDLTS 277


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +2

Query: 473 IPADESEYLEEDPDFGDDEPLKREEPQPTVSAEPLQI 583
           +PA ESE   ED D  D+E L+  E +   S +PL +
Sbjct: 101 VPASESE---EDFDDVDEEMLRAAEMEVFQSCQPLAV 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,801,231
Number of Sequences: 5004
Number of extensions: 57173
Number of successful extensions: 193
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)