Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30a12
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    26   5.0  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    26   6.6  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    26   6.6  

>SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 144

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 286 LSLANIPCRKSRSSGTKAVNYYASIAS 206
           LSLA +P  ++RS GTK + Y    A+
Sbjct: 74  LSLAVLPAYRNRSIGTKLLEYACETAA 100


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 452 NRTSMSTARRGVFVNNYRSAYEGSLRAERQL 544
           +R   +T +    +NN RS+  GSL+ ER L
Sbjct: 848 HRQLTTTVKMRPLLNNIRSSLRGSLQEERSL 878


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 610 RLRLCAKLFVELYDELGEFGDLC 678
           RL+LC K  V+ +  L +F  LC
Sbjct: 82  RLQLCPKCIVKYHQSLDDFKSLC 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,843,409
Number of Sequences: 5004
Number of extensions: 55972
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)