Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30a06
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...   177   1e-45
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    29   0.99 
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    28   1.3  
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    27   3.0  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    27   4.0  
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    26   5.3  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    25   9.2  

>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score =  177 bits (431), Expect = 1e-45
 Identities = 80/193 (41%), Positives = 122/193 (63%), Gaps = 1/193 (0%)
 Frame = +3

Query: 204 LKDLKMAMEVLNLQQKPAKTTEEALHKAYQFWSTQPVPKMDEKIIANEPIELPKSPEEIR 383
           +++L   + + +L +K         ++ ++FW TQPVPK D++     PI+      ++ 
Sbjct: 23  IRELLDRLALRSLIEKEEAAAPPKTYEDFKFWKTQPVPKFDDECTQEGPIDPNTDINQVP 82

Query: 384 AEPYTLPDGFQWDTLNLNEPLVLKELYTLLNENYVEDDDCMFRFDYQTDFLKWALQPPGW 563
            EPY L   F+W T+++     L E++ LL ENYVED   M RF Y ++FL+WAL PPG+
Sbjct: 83  REPYRLLKEFEWATIDVTNDNELSEVHELLTENYVEDATAMLRFAYISEFLRWALMPPGY 142

Query: 564 KMEWHCGVRVVKSGRLVGFISATPADLRIYNH-VQTVVEINFLCVHKKLRSKRVAPVLLR 740
             EWH GVRV  S +LV FISA P  +R+ +  ++   E+NFLC+HKKLRSKR+ P+L++
Sbjct: 143 VKEWHVGVRVKSSRKLVAFISAVPLSIRVRDKIIKKCAEVNFLCIHKKLRSKRLTPLLIK 202

Query: 741 EITRRVNLTGIFQ 779
           E+TRR +L  ++Q
Sbjct: 203 EVTRRCHLENVWQ 215


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 225 MEVLNLQQKPAKTTEEALHKAYQFWSTQPVP-KMDEKIIANEPIEL 359
           MEVL LQ+KP    +  ++K +      PV  K   K++ +E ++L
Sbjct: 588 MEVLELQKKPPYIVQNTMYKLFFGEPLNPVAVKAQRKVMPDENLDL 633



 Score = 28.7 bits (61), Expect = 0.99
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +3

Query: 360 PKSPEEIRAEPYTLPDGFQWDTLNLNEPLV-LKELYTLLNENYVEDDDCMFRFD 518
           P +P  ++A+   +PD    + L+LN P+  + E+   L EN ++ DD +  FD
Sbjct: 613 PLNPVAVKAQRKVMPD----ENLDLNCPINGVIEVPKELLENIIQSDDSLINFD 662


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -1

Query: 591 HEHHNAIPFSNQVVVEPISKNQFGNQNETYNHHLPHNFH 475
           H H +   ++ +   E IS     N +  ++HH  HN H
Sbjct: 546 HNHDHIHKYNEKCDHESISLQNLDNDHHCHHHHENHNMH 584


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
 Frame = +3

Query: 429 NLNEPLVLKELY---TLLNE--NYVEDDDCMFRFDYQTD 530
           N N   +L+ ++    LLNE  NYV+  DC+F   ++TD
Sbjct: 44  NQNRNQLLRSIHIIQNLLNELDNYVDRSDCLFHSVWRTD 82


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 189 HQNISLKDLKMAMEVLNLQQKPAKTTEEALHKAYQFWST 305
           H+N  + + K   + +NL   P K+ E +L++ Y    T
Sbjct: 736 HENEKILEWKSTDDTINLPMNPHKSLEASLYEKYDLCIT 774


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +3

Query: 141 STANESSSSMPDPTEGHQNISLKDLKMAMEVLNLQQKPAKTTE-EALHKAYQFWSTQPVP 317
           S  N    ++P   +G+++I L    +A EVL L+   ++TT  E +   Y +   + + 
Sbjct: 155 SILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRDPEEIE 214

Query: 318 KMDEK 332
           + +E+
Sbjct: 215 REEEQ 219


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +1

Query: 280 IKHTNSGQPNRCQKWMKKLLPTSL*NYQNHRKK*GQNPILYLTDS 414
           I H N+ + +R Q W +K +P    +   H+ K        LTDS
Sbjct: 58  IVHLNNLKEDRFQLWFEKYIPQKAADLAVHKSKISAIKQWMLTDS 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,237,133
Number of Sequences: 5004
Number of extensions: 70316
Number of successful extensions: 218
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)