Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30a02
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    26   3.8  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    26   5.0  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    25   6.6  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   8.7  

>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/42 (28%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = -2

Query: 297 INNRQTATS-LREQSSGHPLQNSFGKIGISLTIRDVVTRCTK 175
           +N R + +S L  +++G+PL  +  K+G+++ + +V    TK
Sbjct: 762 VNARLSRSSALASKATGYPLAFTAAKLGLNIPLNEVKNSVTK 803


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 423 VSVTALKLLPPWYSRLRVSPSF*AFAVFTEETTVN 527
           VSV+ LKLL P + R+ ++ S    A FT   T N
Sbjct: 266 VSVSTLKLLEPKFERITLAMSAQLAASFTLYETYN 300


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +3

Query: 411 VCVAVSVTALKLLPPWYSRLRVSPSF*AFAVFTEETTVNLLTWACVTN*RPAPAPLGSLT 590
           + + VS   L LLP  +S   VSP      +FT   ++ LL   C  + + A  P+ +L 
Sbjct: 286 IVLFVSGFTLLLLPFSHSSQVVSPDSTILTLFTITLSIALLVTLCFYDVKYARYPVFALK 345

Query: 591 KISKR 605
            +  R
Sbjct: 346 SLKDR 350


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 252  GHPLQNSFGKIGISLTIRDVVTRCTKFVGKYLLSKKLP 139
            G  L +   K+G SL +RDV  + T    + +L  +LP
Sbjct: 1820 GFSLSSQCFKVGHSLLVRDVERQKTLLDSQNILQSQLP 1857


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,246,827
Number of Sequences: 5004
Number of extensions: 43387
Number of successful extensions: 119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)