Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30a02
         (616 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0039 - 17486716-17487855                                         28   5.1  
02_05_0412 + 28768255-28768290,28769436-28769529,28769650-28771226     28   6.8  
03_05_0679 + 26678131-26679204                                         27   8.9  

>01_05_0039 - 17486716-17487855
          Length = 379

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +2

Query: 353 SDDLLAQLIDDERLDWLLCRLCCGQRNCSEAFAALVLKVTSFAFLLGV 496
           +D  LA L+       LL  L C +R  S  FA    ++  +  LLG+
Sbjct: 76  ADRWLATLVQSAGFPALLLPLMCARRPASRPFAGFTPRLVMYCVLLGL 123


>02_05_0412 + 28768255-28768290,28769436-28769529,28769650-28771226
          Length = 568

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = +3

Query: 285 ACYLWKRLCVTFGITSANTYCVTLMIF*RN*SMMKD*IGFFVVCVAVSVTALKLLPPWYS 464
           A + W  LCV FG+  +    V +    +N S      G    C+AV+  A  L  P Y 
Sbjct: 190 AFFSWFYLCVDFGLIVSGVLLVWIQ---QNVSWGLG-FGIATACIAVAFAAFVLATPMYK 245

Query: 465 R 467
           R
Sbjct: 246 R 246


>03_05_0679 + 26678131-26679204
          Length = 357

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -2

Query: 216 ISLTIRDVVTRCTKFVGKYLLSKKLPSCIKCTSLTNNDMAMTND 85
           IS +IR  + R   +   YL +  LP+C++     ++D+ +T+D
Sbjct: 142 ISTSIRGALDRPLNYARSYLATT-LPACVRRVVYLDSDVVVTDD 184


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,431,688
Number of Sequences: 37544
Number of extensions: 276706
Number of successful extensions: 720
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)