Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30a02
         (616 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC064532-1|AAH64532.1|  387|Homo sapiens signal-regulatory prote...    29   9.9  
AL138804-8|CAI16692.2|  387|Homo sapiens signal-regulatory prote...    29   9.9  
AL138804-5|CAC00474.1|  354|Homo sapiens signal-regulatory prote...    29   9.9  
AL109809-4|CAM28285.1|  387|Homo sapiens signal-regulatory prote...    29   9.9  

>BC064532-1|AAH64532.1|  387|Homo sapiens signal-regulatory protein
           gamma protein.
          Length = 387

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = -2

Query: 354 ELRSMYSRM*FQT*RKDASINNRQTATSLREQSSGHPLQNSFGKIGISLTIRDVVTRC-T 178
           ++R  Y +    T  ++ ++  R+TA++L E   G     S+  + IS    DVV  C  
Sbjct: 272 QVRKFYPQSLQLTWSENGNVCQRETASTLTENKDGTYNWTSWFLVNISDQRDDVVLTCQV 331

Query: 177 KFVGKYLLSKKL 142
           K  G+  +SK+L
Sbjct: 332 KHDGQLAVSKRL 343


>AL138804-8|CAI16692.2|  387|Homo sapiens signal-regulatory protein
           beta 2 protein.
          Length = 387

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = -2

Query: 354 ELRSMYSRM*FQT*RKDASINNRQTATSLREQSSGHPLQNSFGKIGISLTIRDVVTRC-T 178
           ++R  Y +    T  ++ ++  R+TA++L E   G     S+  + IS    DVV  C  
Sbjct: 272 QVRKFYPQSLQLTWSENGNVCQRETASTLTENKDGTYNWTSWFLVNISDQRDDVVLTCQV 331

Query: 177 KFVGKYLLSKKL 142
           K  G+  +SK+L
Sbjct: 332 KHDGQLAVSKRL 343


>AL138804-5|CAC00474.1|  354|Homo sapiens signal-regulatory protein
           beta 2 protein.
          Length = 354

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = -2

Query: 354 ELRSMYSRM*FQT*RKDASINNRQTATSLREQSSGHPLQNSFGKIGISLTIRDVVTRC-T 178
           ++R  Y +    T  ++ ++  R+TA++L E   G     S+  + IS    DVV  C  
Sbjct: 239 QVRKFYPQSLQLTWSENGNVCQRETASTLTENKDGTYNWTSWFLVNISDQRDDVVLTCQV 298

Query: 177 KFVGKYLLSKKL 142
           K  G+  +SK+L
Sbjct: 299 KHDGQLAVSKRL 310


>AL109809-4|CAM28285.1|  387|Homo sapiens signal-regulatory protein
           beta 2 protein.
          Length = 387

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = -2

Query: 354 ELRSMYSRM*FQT*RKDASINNRQTATSLREQSSGHPLQNSFGKIGISLTIRDVVTRC-T 178
           ++R  Y +    T  ++ ++  R+TA++L E   G     S+  + IS    DVV  C  
Sbjct: 272 QVRKFYPQSLQLTWSENGNVCQRETASTLTENKDGTYNWTSWFLVNISDQRDDVVLTCQV 331

Query: 177 KFVGKYLLSKKL 142
           K  G+  +SK+L
Sbjct: 332 KHDGQLAVSKRL 343


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,261,169
Number of Sequences: 237096
Number of extensions: 1485114
Number of successful extensions: 2931
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2931
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6579110070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)