Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30a02
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021470-2|CAE17952.1|  398|Caenorhabditis elegans Hypothetical ...    32   0.37 
AL021470-1|CAA16292.1|  401|Caenorhabditis elegans Hypothetical ...    32   0.37 
AF273816-1|AAG15165.1|  274|Caenorhabditis elegans nuclear recep...    32   0.37 
AC024746-13|AAF60407.2|  480|Caenorhabditis elegans Hypothetical...    28   4.6  
Z75545-4|CAD01087.1|  108|Caenorhabditis elegans Hypothetical pr...    28   6.1  
AF078783-1|AAK82900.1|  382|Caenorhabditis elegans Hypothetical ...    27   8.1  
AC024759-7|AAP13762.1|  483|Caenorhabditis elegans Hypothetical ...    27   8.1  

>AL021470-2|CAE17952.1|  398|Caenorhabditis elegans Hypothetical
           protein Y17D7A.3b protein.
          Length = 398

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
 Frame = +2

Query: 257 LCSLSEVAV----CLLFMEASLRYVWNYIRE-YILRNSDDLLAQLIDDERLDWLLCRLC- 418
           +C L+E+ V    C  F    +RY  +   + Y+ +  D++L    +D  L +++C+LC 
Sbjct: 253 VCDLNEIEVDMSWCTNFSNEQMRYFLDTSHDSYVYQVMDEMLGLKPNDVELSYMMCQLCL 312

Query: 419 --CGQR 430
              GQR
Sbjct: 313 QYAGQR 318


>AL021470-1|CAA16292.1|  401|Caenorhabditis elegans Hypothetical
           protein Y17D7A.3a protein.
          Length = 401

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
 Frame = +2

Query: 257 LCSLSEVAV----CLLFMEASLRYVWNYIRE-YILRNSDDLLAQLIDDERLDWLLCRLC- 418
           +C L+E+ V    C  F    +RY  +   + Y+ +  D++L    +D  L +++C+LC 
Sbjct: 253 VCDLNEIEVDMSWCTNFSNEQMRYFLDTSHDSYVYQVMDEMLGLKPNDVELSYMMCQLCL 312

Query: 419 --CGQR 430
              GQR
Sbjct: 313 QYAGQR 318


>AF273816-1|AAG15165.1|  274|Caenorhabditis elegans nuclear receptor
           NHR-65 protein.
          Length = 274

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
 Frame = +2

Query: 257 LCSLSEVAV----CLLFMEASLRYVWNYIRE-YILRNSDDLLAQLIDDERLDWLLCRLC- 418
           +C L+E+ V    C  F    +RY  +   + Y+ +  D++L    +D  L +++C+LC 
Sbjct: 126 VCDLNEIEVDMSWCTNFSNEQMRYFLDTSHDSYVYQVMDEMLGLKPNDVELSYMMCQLCL 185

Query: 419 --CGQR 430
              GQR
Sbjct: 186 QYAGQR 191


>AC024746-13|AAF60407.2|  480|Caenorhabditis elegans Hypothetical
           protein Y110A2AL.12a protein.
          Length = 480

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +2

Query: 161 YFPTNLVHLVTTSLIVKEIPIFPKLFWRGCPLLCSLSEVAVCLLFMEASL 310
           YF +  + LVT +++  + PIFP+ + +      S+ +V V     +A+L
Sbjct: 143 YFRSLTMILVTLAILAVDFPIFPRKYAKTEKFGHSMMDVGVAAFLFQAAL 192


>Z75545-4|CAD01087.1|  108|Caenorhabditis elegans Hypothetical
           protein K10D3.6 protein.
          Length = 108

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +2

Query: 185 LVTTSLIVKEIPIFPKLFWRGCPLLCSLSEVAVCLLFMEASLRYVWNYIREYIL 346
           + T  L++  +  F  LF+   P+L +   +AVCLL +   +  ++   R Y L
Sbjct: 12  IATLYLLIISMATFLTLFFYSEPVLFAFVIIAVCLLVLSYPILCLFTVTRSYDL 65


>AF078783-1|AAK82900.1|  382|Caenorhabditis elegans Hypothetical
           protein H10E21.2 protein.
          Length = 382

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +2

Query: 341 ILRNSDDLLAQLI--DDERLDWLLCRLCCGQRNCSEAFAALVLKVTSFAFLLG 493
           +LR   + + Q++  + E +++ +  + C   +CS +F A+V  + +F F  G
Sbjct: 111 VLRICSNDVTQMLQKEAEHMEYCISAVLCYGVDCSRSFDAMVFNILAFVFGYG 163


>AC024759-7|AAP13762.1|  483|Caenorhabditis elegans Hypothetical
           protein Y37E11AR.7 protein.
          Length = 483

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = -3

Query: 431 YADRNTDDKEANLVFHHRSVALEDHQSY 348
           Y DR   D+E NLVF  R  ALED   Y
Sbjct: 406 YKDRAYFDEETNLVF--RKFALEDDDEY 431


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,527,684
Number of Sequences: 27780
Number of extensions: 246892
Number of successful extensions: 659
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)