Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30a02
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    23   2.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.6  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 297 INNRQTATSLREQSSGHPLQ 238
           INN +T+  +  Q SG P Q
Sbjct: 43  INNFETSNGISHQESGQPKQ 62


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/60 (20%), Positives = 30/60 (50%)
 Frame = +2

Query: 32  AFIV*YFNLYNIIMVKTVSLVIAMSLLVNDVHFIQDGSFLESKYFPTNLVHLVTTSLIVK 211
           + +V     Y I  +  VS+ I ++++V +VHF    +   + +     +H++   L+++
Sbjct: 301 SLVVPLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIHILPRLLVMR 360


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/60 (20%), Positives = 30/60 (50%)
 Frame = +2

Query: 32  AFIV*YFNLYNIIMVKTVSLVIAMSLLVNDVHFIQDGSFLESKYFPTNLVHLVTTSLIVK 211
           + +V     Y I  +  VS+ I ++++V +VHF    +   + +     +H++   L+++
Sbjct: 301 SLVVPLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIHILPRLLVMR 360


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 249 VHCSVPLVRSLFACYLWKRLCVTF 320
           ++ S+P V    A  +W  +C+TF
Sbjct: 291 INASLPPVSYTKAIDIWTGVCLTF 314


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 249 VHCSVPLVRSLFACYLWKRLCVTF 320
           ++ S+P V    A  +W  +C+TF
Sbjct: 291 INASLPPVSYTKAIDIWTGVCLTF 314


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,498
Number of Sequences: 438
Number of extensions: 3128
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)