Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2p21
(720 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical pr... 35 0.067
U97194-2|AAN84846.1| 806|Caenorhabditis elegans Prion-like-(q/n... 33 0.21
U97194-1|AAK68236.1| 788|Caenorhabditis elegans Prion-like-(q/n... 33 0.21
AF170425-1|AAF89696.1| 788|Caenorhabditis elegans putative MAP-... 33 0.21
Z81076-3|CAB03052.1| 394|Caenorhabditis elegans Hypothetical pr... 32 0.47
AC006611-3|AAM15554.1| 798|Caenorhabditis elegans Protein kinas... 31 1.1
AC006611-2|AAK85457.1| 867|Caenorhabditis elegans Protein kinas... 31 1.1
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 30 1.9
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 30 1.9
U41034-2|AAA82379.1| 915|Caenorhabditis elegans Hypothetical pr... 30 1.9
AF047662-7|AAC04439.1| 955|Caenorhabditis elegans Hypothetical ... 30 1.9
Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical pr... 29 2.5
AL032637-15|CAA21616.2| 370|Caenorhabditis elegans Hypothetical... 29 2.5
Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr... 28 5.8
U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical pr... 28 5.8
U23177-7|AAM22053.1| 867|Caenorhabditis elegans Hypothetical pr... 28 5.8
CU457737-1|CAM36322.1| 373|Caenorhabditis elegans Hypothetical ... 28 5.8
AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric ... 28 5.8
AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric ... 28 5.8
U41014-2|AAK32945.1| 182|Caenorhabditis elegans Hypothetical pr... 28 7.7
AF125442-7|AAD12796.1| 203|Caenorhabditis elegans Hypothetical ... 28 7.7
AF016438-7|AAQ62454.1| 451|Caenorhabditis elegans Nuclear hormo... 28 7.7
>Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical
protein F26C11.3 protein.
Length = 1317
Score = 34.7 bits (76), Expect = 0.067
Identities = 28/121 (23%), Positives = 53/121 (43%)
Frame = +1
Query: 52 SIMDTTPSTENNKREQSTVSQNLVLNSIQSTAADNDETFYDQDSGRLVGTPTLLKTIPTS 231
S TTPSTE + + + Q+ ++S+Q T D+ P+ T+PTS
Sbjct: 316 STQTTTPSTEPSTTITTPMEQSSTVSSVQKTRTSEDK-------------PSSSTTVPTS 362
Query: 232 KPSSKQTSLQVVTKLSQNTDLILTQPMITADTEKYSDIQGSLQVPTAQAISTSRHSSKQP 411
+S+ ++ + + S ++ + P T+ + S + GS +ST+ S+
Sbjct: 363 ASTSESSTSSPMAETSSSSTTSQSSPASTSTVPESSTV-GSTPTTGLTTLSTNEQSTSTS 421
Query: 412 S 414
S
Sbjct: 422 S 422
>U97194-2|AAN84846.1| 806|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 21,
isoform b protein.
Length = 806
Score = 33.1 bits (72), Expect = 0.21
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 1/106 (0%)
Frame = +1
Query: 76 TENNKREQSTVSQNLVLNSIQSTAADNDETFYDQDSGRLVGTPTLLKTIPTSKP-SSKQT 252
++N+KR SI S N+ T D D + P L K +P P +
Sbjct: 452 SKNHKRRVMMYESICTQTSISSLETQNNSTQIDDDLPPMPQMPILKKEVPIKTPIGNVYE 511
Query: 253 SLQVVTKLSQNTDLILTQPMITADTEKYSDIQGSLQVPTAQAISTS 390
L ++ TDL+L P +A + + + G QV ++ +T+
Sbjct: 512 DLSDDDSETKPTDLVLKTPSSSA-SSAVATLMGIAQVSSSTTSATT 556
>U97194-1|AAK68236.1| 788|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 21,
isoform a protein.
Length = 788
Score = 33.1 bits (72), Expect = 0.21
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 1/106 (0%)
Frame = +1
Query: 76 TENNKREQSTVSQNLVLNSIQSTAADNDETFYDQDSGRLVGTPTLLKTIPTSKP-SSKQT 252
++N+KR SI S N+ T D D + P L K +P P +
Sbjct: 434 SKNHKRRVMMYESICTQTSISSLETQNNSTQIDDDLPPMPQMPILKKEVPIKTPIGNVYE 493
Query: 253 SLQVVTKLSQNTDLILTQPMITADTEKYSDIQGSLQVPTAQAISTS 390
L ++ TDL+L P +A + + + G QV ++ +T+
Sbjct: 494 DLSDDDSETKPTDLVLKTPSSSA-SSAVATLMGIAQVSSSTTSATT 538
>AF170425-1|AAF89696.1| 788|Caenorhabditis elegans putative
MAP-like protein protein.
Length = 788
Score = 33.1 bits (72), Expect = 0.21
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 1/106 (0%)
Frame = +1
Query: 76 TENNKREQSTVSQNLVLNSIQSTAADNDETFYDQDSGRLVGTPTLLKTIPTSKP-SSKQT 252
++N+KR SI S N+ T D D + P L K +P P +
Sbjct: 434 SKNHKRRVMMYESICTQTSISSLETQNNSTQIDDDLPPMPQMPILKKEVPIKTPIGNVYE 493
Query: 253 SLQVVTKLSQNTDLILTQPMITADTEKYSDIQGSLQVPTAQAISTS 390
L ++ TDL+L P +A + + + G QV ++ +T+
Sbjct: 494 DLSDDDSETKPTDLVLKTPSSSA-SSAVATLMGIAQVSSSTTSATT 538
>Z81076-3|CAB03052.1| 394|Caenorhabditis elegans Hypothetical
protein F35C5.3 protein.
Length = 394
Score = 31.9 bits (69), Expect = 0.47
Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 4/121 (3%)
Frame = +1
Query: 61 DTTPSTENNKREQSTVSQNLVLNS----IQSTAADNDETFYDQDSGRLVGTPTLLKTIPT 228
DTT S E + +TVSQ+ ++ Q T D T + S + T+
Sbjct: 139 DTTVSQETTVSQDTTVSQDTTVSQESTVSQETTVSQDTTVSQETSVSHETNVSPDTTVSQ 198
Query: 229 SKPSSKQTSLQVVTKLSQNTDLILTQPMITADTEKYSDIQGSLQVPTAQAISTSRHSSKQ 408
S+ T++ T LSQ T + + ++ DT + S +Q + S+ ++
Sbjct: 199 ESTVSQDTTVSQETTLSQET-TVSQETTVSQDTTVSQETTASQDTTVSQDTTVSQDTTVV 257
Query: 409 P 411
P
Sbjct: 258 P 258
Score = 29.5 bits (63), Expect = 2.5
Identities = 26/116 (22%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Frame = +1
Query: 61 DTTPSTENNKREQSTVSQNLVLNSIQSTAADNDETFYDQDSGRLVGTPTLLKTIPTSKPS 240
DTT S E+ +++TVSQ+ ++ Q T+ ++ + T + T+
Sbjct: 157 DTTVSQESTVSQETTVSQDTTVS--QETSVSHETNVSPDTTVSQESTVSQDTTVSQETTL 214
Query: 241 SKQTSLQVVTKLSQNTDLILTQPMITADTEKYSDI---QGSLQVPTAQAISTSRHS 399
S++T++ T +SQ+T + + + DT D Q + VP + ++ S
Sbjct: 215 SQETTVSQETTVSQDT-TVSQETTASQDTTVSQDTTVSQDTTVVPQETTVEATKAS 269
Score = 27.9 bits (59), Expect = 7.7
Identities = 23/111 (20%), Positives = 47/111 (42%)
Frame = +1
Query: 70 PSTENNKREQSTVSQNLVLNSIQSTAADNDETFYDQDSGRLVGTPTLLKTIPTSKPSSKQ 249
P+T + E + + V S A+ ET QD+ G + T+ S++
Sbjct: 69 PTTADTTAEPTKAHETTVAQEATSEGAETHETTVGQDTTVRSG-ESQETTVSQGTTVSQE 127
Query: 250 TSLQVVTKLSQNTDLILTQPMITADTEKYSDIQGSLQVPTAQAISTSRHSS 402
++ T +SQ+T + + ++ DT D S + +Q + S+ ++
Sbjct: 128 NTVSQETTVSQDT-TVSQETTVSQDTTVSQDTTVSQESTVSQETTVSQDTT 177
>AC006611-3|AAM15554.1| 798|Caenorhabditis elegans Protein kinase
protein 32, isoformb protein.
Length = 798
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +1
Query: 265 VTKLSQNTDLILTQPMITADTEKYSDIQGSLQVPTAQA 378
VT +Q TD+ +T+ +I D ++ S + G LQV QA
Sbjct: 718 VTTTTQRTDVDMTKTLIANDMKQMSRVMGKLQVNGHQA 755
>AC006611-2|AAK85457.1| 867|Caenorhabditis elegans Protein kinase
protein 32, isoforma protein.
Length = 867
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +1
Query: 265 VTKLSQNTDLILTQPMITADTEKYSDIQGSLQVPTAQA 378
VT +Q TD+ +T+ +I D ++ S + G LQV QA
Sbjct: 787 VTTTTQRTDVDMTKTLIANDMKQMSRVMGKLQVNGHQA 824
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical protein
ZK945.9 protein.
Length = 3178
Score = 29.9 bits (64), Expect = 1.9
Identities = 31/121 (25%), Positives = 44/121 (36%), Gaps = 7/121 (5%)
Frame = +1
Query: 52 SIMDTTPSTENNKREQSTV-------SQNLVLNSIQSTAADNDETFYDQDSGRLVGTPTL 210
S +TPST ++ STV S + S ST + T ++S T T+
Sbjct: 671 SSTSSTPSTPSSTLSTSTVTEPSSTRSSDSTTTSAGSTTTLQESTTTSEESTTDSSTTTI 730
Query: 211 LKTIPTSKPSSKQTSLQVVTKLSQNTDLILTQPMITADTEKYSDIQGSLQVPTAQAISTS 390
T TS S T+ T D IL + +T D + +PT T
Sbjct: 731 SDTSTTSSSPSSTTADSTSTLSVDQFDFILDSGLSWNETRHNEDSINIVPLPTNAITPTE 790
Query: 391 R 393
R
Sbjct: 791 R 791
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 29.9 bits (64), Expect = 1.9
Identities = 31/121 (25%), Positives = 44/121 (36%), Gaps = 7/121 (5%)
Frame = +1
Query: 52 SIMDTTPSTENNKREQSTV-------SQNLVLNSIQSTAADNDETFYDQDSGRLVGTPTL 210
S +TPST ++ STV S + S ST + T ++S T T+
Sbjct: 671 SSTSSTPSTPSSTLSTSTVTEPSSTRSSDSTTTSAGSTTTLQESTTTSEESTTDSSTTTI 730
Query: 211 LKTIPTSKPSSKQTSLQVVTKLSQNTDLILTQPMITADTEKYSDIQGSLQVPTAQAISTS 390
T TS S T+ T D IL + +T D + +PT T
Sbjct: 731 SDTSTTSSSPSSTTADSTSTLSVDQFDFILDSGLSWNETRHNEDSINIVPLPTNAITPTE 790
Query: 391 R 393
R
Sbjct: 791 R 791
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 29.9 bits (64), Expect = 1.9
Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 2/120 (1%)
Frame = +1
Query: 64 TTPSTENNKREQSTVSQNLVLNS-IQSTAADNDETFYDQDSGRLVGTPTLLKTIPTSKPS 240
T+PST N + STV+ S + +++A + + G G+ T + S
Sbjct: 1456 TSPST--NSQTGSTVTMGSSSTSGVSTSSASSTQPQMSTSQGSSAGSTVASSTASPAASS 1513
Query: 241 SKQTSLQVVTKLSQNT-DLILTQPMITADTEKYSDIQGSLQVPTAQAISTSRHSSKQPSL 417
+ +S ++ S T +++ TA + ++ + +STS SS QP +
Sbjct: 1514 TAPSSTGTMSSTSSGTVGSTISESSTTASASSQTGSTVTMGSSSTSGVSTSSASSTQPQM 1573
>U41034-2|AAA82379.1| 915|Caenorhabditis elegans Hypothetical
protein M02D8.3 protein.
Length = 915
Score = 29.9 bits (64), Expect = 1.9
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 10/121 (8%)
Frame = +1
Query: 340 DIQGSLQVPTAQAISTSRHSSKQPSLQVIXXXXXXXXXXIAPQSPPQLANFLHSPIPTDH 519
D+ +L VPTAQ+ + + SSK+P + PQ+ PQLA + TD
Sbjct: 297 DMPSALPVPTAQSSKSPKESSKEPPKSLCPAINRSD----LPQT-PQLAKVDEN---TDM 348
Query: 520 NISIEVSHR---------NYNGSVRSKSPEQKSPKS-LSIKSEYLEERKMETDLETREPE 669
N S ++ + Y V S E K K+ + ++ E + RK E + + +E +
Sbjct: 349 NSSSDLPRKTPRRSCVRGTYKDLVDSDGEEDKEKKTKMEMEKEKEKTRKKEENNKRKEKK 408
Query: 670 E 672
E
Sbjct: 409 E 409
>AF047662-7|AAC04439.1| 955|Caenorhabditis elegans Hypothetical
protein T22B2.1 protein.
Length = 955
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +1
Query: 580 EQKSPKSLSIKSEYLEERKMETDLETREPEETSVNRK 690
++KS KSL KS+ LEE++ T+ R EET + K
Sbjct: 739 QEKSIKSLKEKSQQLEEKRSITNNTQRLLEETEIIHK 775
>Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical
protein C49C3.13 protein.
Length = 499
Score = 29.5 bits (63), Expect = 2.5
Identities = 25/114 (21%), Positives = 39/114 (34%)
Frame = +1
Query: 61 DTTPSTENNKREQSTVSQNLVLNSIQSTAADNDETFYDQDSGRLVGTPTLLKTIPTSKPS 240
D T + + K + S + S ST T TPT T PT+ P+
Sbjct: 229 DPTSTAPHIKYDTSYTCASTTTVSTTSTVTTTKPTTTTTTPTTTTTTPTTTTTTPTTTPT 288
Query: 241 SKQTSLQVVTKLSQNTDLILTQPMITADTEKYSDIQGSLQVPTAQAISTSRHSS 402
+ T+ T S T+ T T T + S I+T+ ++
Sbjct: 289 TTTTTPTTTTTESTTTETTSTTTPTTTTTAPTTTTTASTTTFKTTTITTTTQTT 342
>AL032637-15|CAA21616.2| 370|Caenorhabditis elegans Hypothetical
protein Y43F8C.16 protein.
Length = 370
Score = 29.5 bits (63), Expect = 2.5
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Frame = +1
Query: 64 TTPSTENNKREQSTVSQNLVLNSIQSTAADNDETFYDQDSGRLVGTPTLLKTIPTSKPSS 243
TTP+ + QST + +T ++ T Q + T T+ T+ P S
Sbjct: 196 TTPNPSSPSTVQSTTTAEPTSTITSTTVPESSTTSVVQSTTTAEPTSTITS---TTVPES 252
Query: 244 KQTSLQVVTKLSQNTDLILTQPM--ITADTEKYSDI--QGSLQVPTAQAISTSRHSSKQP 411
TSL + + L+ T LI T M IT +++ S I GS P+ + ++ S+ P
Sbjct: 253 -STSL-LTSTLASTTTLIPTSTMSTITLTSDRTSTITSTGSSNPPSTSTVPSTTTSTTTP 310
Score = 28.3 bits (60), Expect = 5.8
Identities = 21/96 (21%), Positives = 43/96 (44%)
Frame = +1
Query: 46 SKSIMDTTPSTENNKREQSTVSQNLVLNSIQSTAADNDETFYDQDSGRLVGTPTLLKTIP 225
S S++ +T ++ ST+S + L S +++ + + + + T T T
Sbjct: 253 STSLLTSTLASTTTLIPTSTMS-TITLTSDRTSTITSTGSSNPPSTSTVPSTTTSTTTPK 311
Query: 226 TSKPSSKQTSLQVVTKLSQNTDLILTQPMITADTEK 333
S PS+ + S V + + L T P++ + TE+
Sbjct: 312 PSSPSTAEASTTPVLTSNLTSALTSTSPLLASSTER 347
>Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical
protein F35C5.4 protein.
Length = 172
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = +1
Query: 46 SKSIMDTTPSTENNKREQSTVSQNLVLNSIQSTAADNDETFYDQDSGRLVGTPTLLKTIP 225
S S ++ E+ +T +Q+ ++ QST+ + + V T TLL T+P
Sbjct: 18 SSSSSPSSSRPEDGATVGNTFTQSSAVSESQSTSERTSRSVSPDSTPVRVTTSTLLSTVP 77
Query: 226 TSKPSS 243
TS+ S
Sbjct: 78 TSQDIS 83
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 28.7 bits (61), Expect = 4.4
Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 1/114 (0%)
Frame = +1
Query: 64 TTPSTENNKREQSTVSQNLVLNS-IQSTAADNDETFYDQDSGRLVGTPTLLKTIPTSKPS 240
TTP+T +T + + +T T + TPT T PT+ +
Sbjct: 187 TTPTTTTTAPTTTTTTPTTTTTTPTTTTTVPTTTTTTPTTTTTTTTTPTTTTTTPTTTTT 246
Query: 241 SKQTSLQVVTKLSQNTDLILTQPMITADTEKYSDIQGSLQVPTAQAISTSRHSS 402
T+ + T T T+P T T + + T T++ ++
Sbjct: 247 PATTTSETTTTTPTTTTQTTTKPTTTTTTPTTTPTTTTTPTTTTTTAKTTKSTT 300
>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical protein
ZK1067.2 protein.
Length = 2219
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = -2
Query: 425 ITCKEGCLDECLDVDIACAVGTCRLP*ISEYFSVSAVIIGCVKIKSVFCDSFV 267
+TC + C L CA C P E V V +GC + V C SF+
Sbjct: 1668 LTCDQRCEKTMLACPHKCAE-ICGQPCTVECMEVVNVTLGCSHSQDVVCSSFM 1719
>U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical
protein F54D11.2 protein.
Length = 1145
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 508 PTDHNISIEVSHRNYNGSVRSKSPEQ-KSPKSLSIKSEYLEERKMETDLETREPEETSVN 684
P + + + +K+ E+ KSP+ + KSE +K E + + +EP +++
Sbjct: 52 PEEQQAPVATPKQTKKAQKTAKTTEEVKSPRKSARKSEL---KKPEPEEKAKEPRKSASK 108
Query: 685 RKSNVSENK 711
RKS+ NK
Sbjct: 109 RKSSSLMNK 117
>U23177-7|AAM22053.1| 867|Caenorhabditis elegans Hypothetical
protein C56G2.1a protein.
Length = 867
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +1
Query: 559 SVRSKSP--EQKSPKSLSIKSEYLEERKMETDLETREPEETSVNRKSNVSENK 711
+V+++ P ++K PKS + +E EE+ +E ET E + + VSE+K
Sbjct: 199 AVQNEKPSIDKKQPKSQA-PTEKKEEKTVEIHTETEETDHVAAGDSGVVSEHK 250
>CU457737-1|CAM36322.1| 373|Caenorhabditis elegans Hypothetical
protein C52D10.1 protein.
Length = 373
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 460 APQSPPQLANFLHSPIPTDHNISIEVSHRNYNGSVRSKSPEQKSPKSLSIKS 615
AP S P + + + HR +NG VRS+S E+ S + +++S
Sbjct: 104 APLSVPSEEDMGFGSFDYNEIVDAAALHRWHNGGVRSRSSEENSVSTQALES 155
>AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform a protein.
Length = 1724
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +1
Query: 88 KREQSTVSQNLVLNSIQSTAADNDETFYDQDSGRLVGTPTLLKTIPTSKPSSK 246
+ E+ + +L++NS ++ ++D D S PT L +P+S+ SSK
Sbjct: 953 RHERLGKTLSLIVNSTENGSSDASTVNPDMPSVHHTRPPTQLSEVPSSQKSSK 1005
>AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform b protein.
Length = 1758
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +1
Query: 88 KREQSTVSQNLVLNSIQSTAADNDETFYDQDSGRLVGTPTLLKTIPTSKPSSK 246
+ E+ + +L++NS ++ ++D D S PT L +P+S+ SSK
Sbjct: 953 RHERLGKTLSLIVNSTENGSSDASTVNPDMPSVHHTRPPTQLSEVPSSQKSSK 1005
>U41014-2|AAK32945.1| 182|Caenorhabditis elegans Hypothetical
protein C06G1.2 protein.
Length = 182
Score = 27.9 bits (59), Expect = 7.7
Identities = 23/111 (20%), Positives = 44/111 (39%)
Frame = +1
Query: 94 EQSTVSQNLVLNSIQSTAADNDETFYDQDSGRLVGTPTLLKTIPTSKPSSKQTSLQVVTK 273
E +T + ++ ST + + T + + + T T +T T+ S+ T+ T+
Sbjct: 46 EATTTTVVETTTTVDSTTTEVETTPTTEATTTVAETTTEAETTTTTVESTTTTTEATTTE 105
Query: 274 LSQNTDLILTQPMITADTEKYSDIQGSLQVPTAQAISTSRHSSKQPSLQVI 426
+ T +P T ++I + PT + S K+P L I
Sbjct: 106 AATTTTTTTEEPATTTKEITTTEIVIAETTPTEEVDEESFLGFKKPDLATI 156
>AF125442-7|AAD12796.1| 203|Caenorhabditis elegans Hypothetical
protein H04M03.11 protein.
Length = 203
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 565 RSKSPEQKSPKSLSIKS 615
RSKSP+ KSPKS +KS
Sbjct: 185 RSKSPKSKSPKSPKLKS 201
>AF016438-7|AAQ62454.1| 451|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 128, isoform b protein.
Length = 451
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/56 (23%), Positives = 26/56 (46%)
Frame = +1
Query: 175 QDSGRLVGTPTLLKTIPTSKPSSKQTSLQVVTKLSQNTDLILTQPMITADTEKYSD 342
Q +G P + K S ++T + V + + DL+ T+P ++ K++D
Sbjct: 148 QSLSTFLGRPAFILCCEPDKTSGRKTLIDVSYLVKEGRDLLRTEPHLSHIPYKFND 203
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.306 0.121 0.316
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,247,437
Number of Sequences: 27780
Number of extensions: 310718
Number of successful extensions: 979
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
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