Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2p19
         (632 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2NGN9 Cluster: Partially conserved hypothetical membra...    34   2.5  
UniRef50_Q4RZ44 Cluster: Chromosome 7 SCAF14966, whole genome sh...    33   4.3  
UniRef50_Q4SK53 Cluster: Chromosome 2 SCAF14570, whole genome sh...    32   10.0 
UniRef50_P15576 Cluster: NADH-ubiquinone oxidoreductase chain 1;...    32   10.0 

>UniRef50_Q2NGN9 Cluster: Partially conserved hypothetical
           membrane-spanning protein; n=1; Methanosphaera
           stadtmanae DSM 3091|Rep: Partially conserved
           hypothetical membrane-spanning protein - Methanosphaera
           stadtmanae (strain DSM 3091)
          Length = 540

 Score = 34.3 bits (75), Expect = 2.5
 Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
 Frame = -3

Query: 507 YYIS-LKIVLTD*HASLKYFKFTNREVIYTTGTH*NVVILIFNDGNIWISFEVIKFLTNT 331
           YYI  +  +LT  + SL Y K      IY T T  + VIL+   G + +SF+ +    N 
Sbjct: 256 YYIEYIPQLLTSTNVSLLYDKTLT--TIYNTPTLLSYVILVLMCGGVILSFKGVYKKENI 313

Query: 330 GCFSQHAAYLLG-----TYIISCCSFQDFYFSLKTILIFSS 223
             FS   A +LG     TY+     F +  F++  +L++ S
Sbjct: 314 HNFSFILAVILGIITIITYLHVSYIFTEILFTITLLLLYKS 354


>UniRef50_Q4RZ44 Cluster: Chromosome 7 SCAF14966, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 7 SCAF14966, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 592

 Score = 33.5 bits (73), Expect = 4.3
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = -3

Query: 450 KFTNREVIYTTGTH*NVVILIFNDGNIWISFEVIKFLTNTGCFSQH-AAYLLGTYIIS 280
           +F  + VI+ T     V  +I    N WI F ++ F+T  G  S + +A++LGT I++
Sbjct: 463 RFGRKPVIFATMAFQAVATIIQMFSNSWIMFCILFFITGFGRVSSYVSAFVLGTEILA 520


>UniRef50_Q4SK53 Cluster: Chromosome 2 SCAF14570, whole genome shotgun
            sequence; n=4; Euteleostomi|Rep: Chromosome 2 SCAF14570,
            whole genome shotgun sequence - Tetraodon nigroviridis
            (Green puffer)
          Length = 1792

 Score = 32.3 bits (70), Expect = 10.0
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = -3

Query: 360  FEVIKFLTNTGCFSQHAAYLLGTYII---SCCSFQDFYFSLKTILIFSSDDYITLI 202
            +E++K L +    + H AY+   Y++     CS ++  FSL   + +S DD +T I
Sbjct: 1565 YEILKSLHHERIMALHEAYVTPRYLVLISEYCSGKELLFSLIDRVRYSEDDVVTYI 1620


>UniRef50_P15576 Cluster: NADH-ubiquinone oxidoreductase chain 1;
           n=20; Trypanosomatidae|Rep: NADH-ubiquinone
           oxidoreductase chain 1 - Leishmania tarentolae
           (Sauroleishmania tarentolae)
          Length = 313

 Score = 32.3 bits (70), Expect = 10.0
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = -3

Query: 306 YLLGTYIIS-CCSFQD-FYFSLKTILIFSSDDYITLIRCLH 190
           YL+G  II+ CC F   FYF +  IL+  +   +T++ C+H
Sbjct: 73  YLIGAMIITACCIFLGWFYFPIGFILLLDTGFTLTVMLCVH 113


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 512,322,036
Number of Sequences: 1657284
Number of extensions: 9290489
Number of successful extensions: 16691
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16690
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46881492319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)