Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2p19
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac...    26   5.2  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    25   6.9  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   9.1  

>SPBC3H7.15 |hhp1||serine/threonine protein kinase
           Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -3

Query: 303 LLGTYIISCCSFQDFYFSLKTILIFSSDDYITLIRCLHS 187
           LLG  +    +F +  FSLKT+L+  +D  I+ I  +HS
Sbjct: 86  LLGPSLEDLFNFCNRKFSLKTVLLL-ADQLISRIEFIHS 123


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 324 FSQHAAYLLGTYIISCCSFQDFYFSLKTILIFSSD 220
           +   +AY+ GT      + +D+Y  L+ +L  SSD
Sbjct: 250 YENDSAYIAGTPSFHIPTIRDYYIDLEFLLSASSD 284


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 293  VPNKYAAC*EKQPVFVRNFITSKLIQIF 376
            +PN Y  C  K P F R+    +LI  F
Sbjct: 2161 LPNFYRQCPSKIPAFYRSLFRRRLIMWF 2188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,333,719
Number of Sequences: 5004
Number of extensions: 45542
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)