Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2p19
         (632 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81556-6|CAB04523.2|  421|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z70203-1|CAA94104.1|  456|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z83111-1|CAB05532.1|  331|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U50308-4|AAG24030.2|  483|Caenorhabditis elegans Amino acid tran...    27   8.4  
U42836-1|ABC48243.1|  497|Caenorhabditis elegans Hypothetical pr...    27   8.4  
AC024791-26|AAK29889.1|  421|Caenorhabditis elegans Hypothetical...    27   8.4  

>Z81556-6|CAB04523.2|  421|Caenorhabditis elegans Hypothetical
           protein F58G1.6 protein.
          Length = 421

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 393 LIFNDGNIWISFEVIKFLTNTGCFSQHAAYLLGTY 289
           L++N   + +++E++  LTN+GCF       LG Y
Sbjct: 282 LVWNGNPVQVTYELL--LTNSGCFEIGTPVFLGNY 314


>Z70203-1|CAA94104.1|  456|Caenorhabditis elegans Hypothetical
           protein C05G5.1 protein.
          Length = 456

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 402 VVILIFNDGNIWISFEVIKFLTNTGCFSQHAA 307
           V ++ F++GN WI++  I F TN    + +AA
Sbjct: 23  VSMINFSNGNTWITYAAITFYTNNYYSNSNAA 54


>Z83111-1|CAB05532.1|  331|Caenorhabditis elegans Hypothetical
           protein F57G8.1 protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 367 PDISIVKY*DHNVSMCTCSVDNFSISKFKIF 459
           PD S++    +N ++C C V  FSI  F++F
Sbjct: 184 PDFSVISI--NNFTLCFCIVTFFSIVGFQVF 212


>U50308-4|AAG24030.2|  483|Caenorhabditis elegans Amino acid
           transporter protein 2 protein.
          Length = 483

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 344 NFITSKLIQIFPSLNIRITTFQCVPVV*ITSLLVNLKYF 460
           NF+T +L    P  N+    +  +P+V I  +LVN+ YF
Sbjct: 229 NFVTEELKN--PFRNLPRAIYISIPIVTIVYMLVNIAYF 265


>U42836-1|ABC48243.1|  497|Caenorhabditis elegans Hypothetical
           protein T21F2.1a protein.
          Length = 497

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = -3

Query: 405 NVVILIFNDGNIWISFEV 352
           N+++LIF +G +W++F V
Sbjct: 188 NILLLIFPNGTVWLNFRV 205


>AC024791-26|AAK29889.1|  421|Caenorhabditis elegans Hypothetical
           protein Y47G6A.27 protein.
          Length = 421

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 382 VKY*DHNVSMCTCSVDNFSISKFKIF 459
           VKY D  +    CS++N SISK K+F
Sbjct: 13  VKYGDREI-FTDCSINNKSISKIKLF 37


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,476,158
Number of Sequences: 27780
Number of extensions: 244562
Number of successful extensions: 485
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)