Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2p17
(742 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI00015B4B16 Cluster: PREDICTED: similar to DNA primas... 251 2e-65
UniRef50_UPI0000DB77C6 Cluster: PREDICTED: similar to primase po... 243 4e-63
UniRef50_UPI0000D5718D Cluster: PREDICTED: similar to CG7108-PA;... 241 1e-62
UniRef50_Q24317 Cluster: DNA primase small subunit; n=4; Diptera... 239 5e-62
UniRef50_P49642 Cluster: DNA primase small subunit; n=34; Eumeta... 232 8e-60
UniRef50_A7QN91 Cluster: Chromosome chr2 scaffold_132, whole gen... 205 8e-52
UniRef50_P34471 Cluster: DNA primase small subunit; n=3; Caenorh... 191 2e-47
UniRef50_Q675Q4 Cluster: DNA primase; n=1; Oikopleura dioica|Rep... 190 2e-47
UniRef50_Q5CQA3 Cluster: DNA primase; n=3; Cryptosporidium|Rep: ... 190 2e-47
UniRef50_Q24HY6 Cluster: DNA primase, eukaryotic-type, small sub... 190 4e-47
UniRef50_Q9FJ26 Cluster: DNA primase; n=1; Arabidopsis thaliana|... 188 9e-47
UniRef50_Q8MWR9 Cluster: DNA primase; n=1; Moneuplotes crassus|R... 186 4e-46
UniRef50_O14215 Cluster: DNA primase small subunit; n=19; Ascomy... 183 5e-45
UniRef50_Q4P979 Cluster: DNA primase; n=1; Ustilago maydis|Rep: ... 182 6e-45
UniRef50_Q7KQM1 Cluster: DNA primase small subunit; n=12; Plasmo... 180 3e-44
UniRef50_Q5KH10 Cluster: DNA primase; n=4; Agaricomycotina|Rep: ... 180 4e-44
UniRef50_Q4UFH5 Cluster: DNA primase small subunit, putative; n=... 173 4e-42
UniRef50_Q00WX0 Cluster: DNA primase; n=2; Ostreococcus|Rep: DNA... 167 2e-40
UniRef50_A5DB56 Cluster: DNA primase; n=5; Saccharomycetales|Rep... 167 3e-40
UniRef50_P10363 Cluster: DNA primase small subunit; n=6; Sacchar... 164 2e-39
UniRef50_Q6CF04 Cluster: DNA primase; n=1; Yarrowia lipolytica|R... 162 7e-39
UniRef50_Q4QBV6 Cluster: DNA primase small subunit, putative; n=... 151 1e-35
UniRef50_A0EG74 Cluster: DNA primase; n=1; Paramecium tetraureli... 148 2e-34
UniRef50_UPI000049921B Cluster: DNA primase small subunit; n=2; ... 146 5e-34
UniRef50_Q8SRD5 Cluster: DNA primase; n=1; Encephalitozoon cunic... 133 5e-30
UniRef50_A2G330 Cluster: DNA primase; n=1; Trichomonas vaginalis... 126 6e-28
UniRef50_Q54MM7 Cluster: DNA primase; n=1; Dictyostelium discoid... 122 1e-26
UniRef50_UPI00004983C2 Cluster: DNA primase small subunit; n=1; ... 117 3e-25
UniRef50_Q7QRZ8 Cluster: DNA primase; n=1; Giardia lamblia ATCC ... 110 3e-23
UniRef50_UPI000155BA73 Cluster: PREDICTED: similar to hCG2016482... 97 3e-19
UniRef50_A2Y3N8 Cluster: DNA primase; n=4; Oryza sativa|Rep: DNA... 73 1e-11
UniRef50_UPI000155BDB7 Cluster: PREDICTED: similar to retinol de... 58 2e-07
UniRef50_O29516 Cluster: Probable DNA primase small subunit; n=2... 56 9e-07
UniRef50_A3DM85 Cluster: DNA primase; n=1; Staphylothermus marin... 52 1e-05
UniRef50_Q0W8M0 Cluster: DNA primase, small subunit; n=2; Archae... 50 6e-05
UniRef50_Q6L0W5 Cluster: Probable DNA primase small subunit; n=2... 50 8e-05
UniRef50_Q9YEZ8 Cluster: Probable DNA primase small subunit; n=1... 49 1e-04
UniRef50_Q8ZTY1 Cluster: Probable DNA primase small subunit; n=4... 48 2e-04
UniRef50_Q979L5 Cluster: Probable DNA primase small subunit; n=4... 48 3e-04
UniRef50_Q9HPU3 Cluster: Probable DNA primase small subunit; n=6... 48 3e-04
UniRef50_A1RXU6 Cluster: DNA primase; n=1; Thermofilum pendens H... 47 4e-04
UniRef50_Q2FPD1 Cluster: DNA primase; n=2; Methanomicrobiales|Re... 46 7e-04
UniRef50_Q58249 Cluster: DNA primase; n=6; Methanococcales|Rep: ... 44 0.005
UniRef50_A3CX73 Cluster: DNA primase; n=2; Methanomicrobiales|Re... 43 0.009
UniRef50_Q9P9H1 Cluster: DNA primase small subunit; n=5; Thermoc... 41 0.028
UniRef50_A0B688 Cluster: DNA primase; n=1; Methanosaeta thermoph... 41 0.037
UniRef50_Q8PVZ4 Cluster: Probable DNA primase small subunit; n=4... 40 0.049
UniRef50_Q8WTP4 Cluster: Phosphatidylinositol phosphate kinase 6... 38 0.26
UniRef50_A7DQM5 Cluster: DNA primase, small subunit; n=1; Candid... 37 0.45
UniRef50_Q8F7A1 Cluster: Diaminopimelate decarboxylase; n=7; cel... 36 1.4
UniRef50_A2A9Q9 Cluster: Novel protein simlar to melanoma antige... 35 2.4
UniRef50_Q93NW8 Cluster: AmphA; n=1; Streptomyces nodosus|Rep: A... 35 2.4
UniRef50_Q2JEV5 Cluster: 6-phosphogluconate dehydrogenase, NAD-b... 34 3.2
UniRef50_Q54SL5 Cluster: Putative uncharacterized protein; n=1; ... 33 5.6
UniRef50_UPI000023F01C Cluster: hypothetical protein FG06462.1; ... 33 9.7
>UniRef50_UPI00015B4B16 Cluster: PREDICTED: similar to DNA primase;
n=2; Nasonia vitripennis|Rep: PREDICTED: similar to DNA
primase - Nasonia vitripennis
Length = 458
Score = 251 bits (614), Expect = 2e-65
Identities = 119/225 (52%), Positives = 158/225 (70%), Gaps = 2/225 (0%)
Frame = +1
Query: 67 NENILSDMLPTYYARQFPQNIFCRWLACGSSPQPLCNRELSFTLADDVYLRYLSISHQKD 246
+E+ LSD+LP YY+R FP + RWL+ G + RE SFTL DD+Y+R+ S + D
Sbjct: 47 DESNLSDLLPLYYSRLFPYIDYYRWLSYGEA-STFSRREFSFTLRDDIYIRFQSFNKIDD 105
Query: 247 LQTLLQKKCPHKLDVGAVYNTKPS-VGRHDAVV-ISRELVFDIDLTDYDEIRTCCQEARV 420
L+ +++ CPHK+D+GAVYN PS GR I RE+V DID+TDYDE+R+CC A V
Sbjct: 106 LKNEIKRLCPHKIDIGAVYNVAPSNKGREIKFEPIQREVVIDIDMTDYDEVRSCCSGADV 165
Query: 421 CEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIAD 600
C KCWK+MV+A +I+D AL+DDFGF ILWVFSGRRGIHCWV D +AR L GR A+A
Sbjct: 166 CNKCWKYMVLAVKILDVALRDDFGFDHILWVFSGRRGIHCWVCDKKARFLTQNGRKAVAH 225
Query: 601 YLCLIVGGENQSKKVHLGNENLHSSIRRALNIIDKYFEQLLXDQE 735
YL LI GGE KKV L N +H S++RA++II+ YF ++ +++
Sbjct: 226 YLQLISGGEFTKKKVKL-NRKMHYSVKRAVSIIEPYFTKMCMEEQ 269
>UniRef50_UPI0000DB77C6 Cluster: PREDICTED: similar to primase
polypeptide 1; n=1; Apis mellifera|Rep: PREDICTED:
similar to primase polypeptide 1 - Apis mellifera
Length = 674
Score = 243 bits (594), Expect = 4e-63
Identities = 117/228 (51%), Positives = 154/228 (67%), Gaps = 3/228 (1%)
Frame = +1
Query: 61 EHNENILSDMLPTYYARQFPQNIFCRWLACGSSPQPLCNRELSFTLADDVYLRYLSISHQ 240
E EN L D+LPTYYAR FP + + RWL+ G+ NRE SFTL DVY+R+ S +
Sbjct: 2 EELEN-LGDLLPTYYARLFPFHDYYRWLSYGNV-NTFNNREFSFTLQGDVYIRFQSFKNV 59
Query: 241 KDLQTLLQKKCPHKLDVGAVYNTKPSVGRHDAV---VISRELVFDIDLTDYDEIRTCCQE 411
K+L+ +++ P K+DVGAVYN P + + +ELVFDID+TDYDEIRTCC
Sbjct: 60 KELELQIRRLLPVKIDVGAVYNYSPKEQKMRGTNFHPVEKELVFDIDMTDYDEIRTCCSG 119
Query: 412 ARVCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGA 591
A +C CWKFM +AC+I+D AL+ DFG++ ILWVFSGRRGIHCWV D ARTL + RGA
Sbjct: 120 ADICASCWKFMALACKILDTALRSDFGYKHILWVFSGRRGIHCWVCDPCARTLTARERGA 179
Query: 592 IADYLCLIVGGENQSKKVHLGNENLHSSIRRALNIIDKYFEQLLXDQE 735
+A+YL +I GGE KKV+L + +H SI+RAL I+ F +++
Sbjct: 180 VAEYLQIIDGGEYMKKKVNLPGDKIHHSIKRALETIEAVFVPFCIEEQ 227
>UniRef50_UPI0000D5718D Cluster: PREDICTED: similar to CG7108-PA;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
CG7108-PA - Tribolium castaneum
Length = 422
Score = 241 bits (590), Expect = 1e-62
Identities = 118/233 (50%), Positives = 159/233 (68%), Gaps = 7/233 (3%)
Frame = +1
Query: 64 HNENILSDMLPTYYARQFPQNIFCRWLACGS---SPQPLCNRELSFTLADDVYLRYLSIS 234
+NE+ L D+LP YY R FP +WL G+ P RE+SFTL D+YLRY S
Sbjct: 6 YNEDSLPDLLPIYYKRLFPHTALHKWLCYGNPSGDPNVSNRREISFTLVGDIYLRYQSFE 65
Query: 235 HQKDLQTLLQKKCPHKLDVGAVYNTK-PSVGRHDA--VVISRELVFDIDLTDYDEIRTCC 405
+ +D L K+ P K+D+GA+Y + S G + + + RE+VFDID+TDYD++RTCC
Sbjct: 66 NAEDFAQALHKRFPVKIDIGAIYKQRLESSGSYSSSKTPVEREIVFDIDMTDYDDVRTCC 125
Query: 406 QEARVCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGR 585
A VC KCWKFMVIAC+I+D AL++DFGF++ILWVFSGRRGIHCWV+D +AR LD R
Sbjct: 126 TGAGVCPKCWKFMVIACKILDGALREDFGFENILWVFSGRRGIHCWVADKKARILDDNQR 185
Query: 586 GAIADYLCLIVGGENQSKKVHLGNENLHSSIRRALNIIDKYFEQ-LLXDQEFL 741
AIA+YL L+ GG +KV N+H++ RAL +ID+YFE+ +L +Q+ L
Sbjct: 186 SAIAEYLTLLRGG-LVVRKVKF--FNMHAATERALKVIDEYFEKSILVEQDIL 235
>UniRef50_Q24317 Cluster: DNA primase small subunit; n=4;
Diptera|Rep: DNA primase small subunit - Drosophila
melanogaster (Fruit fly)
Length = 438
Score = 239 bits (585), Expect = 5e-62
Identities = 113/233 (48%), Positives = 155/233 (66%), Gaps = 7/233 (3%)
Frame = +1
Query: 64 HNENILSDMLPTYYARQFPQNIFCRWLACGSSPQPL-CNRELSFTLADDVYLRYLSISHQ 240
+N +L DMLP YY R FP F RWL+ GSS + NRE+SFTL DD+Y+RYL Q
Sbjct: 23 YNPEVLQDMLPVYYRRLFPHLPFYRWLSYGSSEDAIFSNREISFTLQDDIYIRYLCFDTQ 82
Query: 241 KDLQTLLQKKCPHKLDVGAVYNTKPSVGRH---DAVVISRELVFDIDLTDYDEIRTCCQE 411
+L+ + + P K+D+G V ++KP R + RELVFDID+TDYDE+RTCC
Sbjct: 83 AELEKEICSRNPIKIDIGPVMHSKPKNHRSIPGGLTPVQRELVFDIDMTDYDEVRTCCSG 142
Query: 412 ARVCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGA 591
A VC KCWKFMV+A ++D AL++DFGF+ I+W+FSGRRGIHCWV DY+AR LD GR A
Sbjct: 143 AGVCLKCWKFMVLAARVLDVALREDFGFEHIIWIFSGRRGIHCWVCDYQARHLDGRGRYA 202
Query: 592 IADYLCLIVGGE---NQSKKVHLGNENLHSSIRRALNIIDKYFEQLLXDQEFL 741
+A+YL +I S + +G + H S++RAL I++ FE+++ + + L
Sbjct: 203 VAEYLNIITYASFAGGNSPRCSMG-DRPHHSLKRALKIVEPMFEEIVLEDQNL 254
>UniRef50_P49642 Cluster: DNA primase small subunit; n=34;
Eumetazoa|Rep: DNA primase small subunit - Homo sapiens
(Human)
Length = 420
Score = 232 bits (567), Expect = 8e-60
Identities = 111/229 (48%), Positives = 155/229 (67%), Gaps = 8/229 (3%)
Frame = +1
Query: 79 LSDMLPTYYARQFPQNIFCRWLACGSSPQPLC-NRELSFTLADDVYLRYLSISHQKDLQT 255
L ++L YY R FP + + RWL G + +RE SFTL DD+Y+RY S ++Q DL+
Sbjct: 9 LPELLKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSFNNQSDLEK 68
Query: 256 LLQKKCPHKLDVGAVYNTKPSVGRHDAVVIS------RELVFDIDLTDYDEIRTCCQEAR 417
+QK P+K+D+GAVY+ +P+ +H+ V + +ELVFDID+TDYD++R CC A
Sbjct: 69 EMQKMNPYKIDIGAVYSHRPN--QHNTVKLGAFQAQEKELVFDIDMTDYDDVRRCCSSAD 126
Query: 418 VCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIA 597
+C KCW M +A IID+ALK+DFGF+ LWV+SGRRG+HCWV D R L S R I
Sbjct: 127 ICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRSGIV 186
Query: 598 DYLCLIVGGENQSKKVHLGNENLHSSIRRALNIIDKYFEQ-LLXDQEFL 741
+YL L+ GG++ KKVHL +E +H IR+++NII KYFE+ L +Q+ L
Sbjct: 187 EYLSLVKGGQDVKKKVHL-SEKIHPFIRKSINIIKKYFEEYALVNQDIL 234
>UniRef50_A7QN91 Cluster: Chromosome chr2 scaffold_132, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr2 scaffold_132, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 457
Score = 205 bits (501), Expect = 8e-52
Identities = 102/230 (44%), Positives = 143/230 (62%), Gaps = 16/230 (6%)
Frame = +1
Query: 82 SDMLPTYYARQFPQNIFCRWLACGSSPQ-PLCN------RELSFTLADDVYLRYLSISHQ 240
++ L YY + FP + +W++ G+ + P C+ RE SFTLADD+YLR+ S +
Sbjct: 35 ANYLKVYYGKLFPHSDLFKWMSYGNDGKHPACDQSYIGRREFSFTLADDIYLRFQSFNSV 94
Query: 241 KDLQTLLQKKCPHKLDVGAVYNTKPSVGRH------DAVV--ISRELVFDIDLTDYDEIR 396
+++ +++KCP K+D+G VY+ P+ RH D V + RELVFDID+TDYD++R
Sbjct: 95 HEMENSIKEKCPFKIDIGPVYSVDPTK-RHAYAQSGDNVFTPVERELVFDIDITDYDDVR 153
Query: 397 TCCQEARVCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDS 576
CC A VC CW M +A ++ID AL+DDFGF ILWV+SGRRG+HCWV D AR L +
Sbjct: 154 YCCSGADVCLDCWPLMTVAIKVIDTALRDDFGFNHILWVYSGRRGVHCWVCDGRARRLSN 213
Query: 577 PGRGAIADYLCLIVGGENQSKKVHLGNENLHSSIRRA-LNIIDKYFEQLL 723
R AIADY + G EN KKV L LH + R+ ++ +FE+ L
Sbjct: 214 EQRAAIADYFRVYKGNENSQKKVSLVGPALHPFLARSYTEVLKDFFEEKL 263
>UniRef50_P34471 Cluster: DNA primase small subunit; n=3;
Caenorhabditis|Rep: DNA primase small subunit -
Caenorhabditis elegans
Length = 410
Score = 191 bits (465), Expect = 2e-47
Identities = 103/232 (44%), Positives = 139/232 (59%), Gaps = 6/232 (2%)
Frame = +1
Query: 64 HNENILSDMLPTYYARQFPQNIFCRWLACGSSPQPLCNR-ELSFTLADDVYLRYLSISHQ 240
+N L LP YY FP F +WL G + NR E +F LADDV++RY S + +
Sbjct: 3 YNSIRLPQDLPIYYKNFFPVKPFTKWLRYGQNNGDYFNRREFAFILADDVHIRYRSYNDE 62
Query: 241 KDLQTLLQKKCPHKLDVGAVYNTKP-SVGRH-DAVVISRELVFDIDLTDYDEIRTCCQEA 414
L P KLD+GAVYN +P + RH D + RELVFDIDLTDYD +R CC++A
Sbjct: 63 HAFFKALSSTNPEKLDIGAVYNHEPINNKRHTDYQAVERELVFDIDLTDYDPVRNCCKDA 122
Query: 415 RVCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAI 594
VC KCWKFMV+A +I+D L+D F F++ +WVFSGRRG+HCWV D +AR L++ R AI
Sbjct: 123 TVCPKCWKFMVLAVKILDFQLEDMFDFKARMWVFSGRRGVHCWVGDKKARMLNNYQRSAI 182
Query: 595 ADYLCLI-VGGENQSKKVHLGNENLHSSIRRALNII--DKYFEQLLXDQEFL 741
A L L G+ + + + +R A N+ D FE+++ DQ +L
Sbjct: 183 ATRLNLFKKNGQCEVTEGRAKMTKVPPIVRDAFNVALKDGVFEKMIYDQGWL 234
>UniRef50_Q675Q4 Cluster: DNA primase; n=1; Oikopleura dioica|Rep:
DNA primase - Oikopleura dioica (Tunicate)
Length = 391
Score = 190 bits (464), Expect = 2e-47
Identities = 96/223 (43%), Positives = 136/223 (60%), Gaps = 1/223 (0%)
Frame = +1
Query: 76 ILSDMLPTYYARQFPQNIFCRWLACGSSPQPLCNRELSFTLADDVYLRYLSISHQKDLQT 255
+ ++L +YY FP + F WL + + L RE SFTL DDVY R+ S + +++L
Sbjct: 15 VSEEVLSSYYKEYFPLDPFIEWLGYRND-ETLSRREFSFTLKDDVYTRFRSFTSKEELHQ 73
Query: 256 LLQKKCPHKLDVGAVYNTKPSVGRH-DAVVISRELVFDIDLTDYDEIRTCCQEARVCEKC 432
K P K+D+GA+YN D RELVFDID++DYD++RTCCQEAR+C+KC
Sbjct: 74 AFIKTKPEKIDIGAIYNYSCKHRLSPDFKEEQRELVFDIDISDYDDVRTCCQEARICQKC 133
Query: 433 WKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIADYLCL 612
W M I +++++ LK FGF+ IL+VFSGRRGIHCWV D EAR L+ R A+A Y C
Sbjct: 134 WPLMSICVKVLEETLKTAFGFEQILFVFSGRRGIHCWVFDEEARKLNGAERFALAHY-CQ 192
Query: 613 IVGGENQSKKVHLGNENLHSSIRRALNIIDKYFEQLLXDQEFL 741
+ + + + LH+ I+ AL I D Y+++ L Q+ L
Sbjct: 193 VTAQQIGT------SHRLHTHIQSALKITDLYWDEYLETQDLL 229
>UniRef50_Q5CQA3 Cluster: DNA primase; n=3; Cryptosporidium|Rep: DNA
primase - Cryptosporidium parvum Iowa II
Length = 402
Score = 190 bits (464), Expect = 2e-47
Identities = 92/201 (45%), Positives = 128/201 (63%), Gaps = 14/201 (6%)
Frame = +1
Query: 175 NRELSFTLA-----DDVYLRYLSISHQKDLQTLLQKKCPHKLDVGAVYN---TKPSVGRH 330
NRE S T+ D++YLR+ L+ + + PHK D+GA+YN ++ +
Sbjct: 22 NREFSMTIKSEIDQDEIYLRWQHFKTIDQLKQEIVARTPHKFDIGAIYNIPISEKEISPL 81
Query: 331 DAVVISRELVFDIDLTDYDEIRTCCQEARVCEKCWKFMVIACEIIDKALKDDFGFQSILW 510
+ RELVFDID+ DYD+IRTCCQE +CEKCW ++ +A +ID +L+ DFGF+ ILW
Sbjct: 82 GFKPVQRELVFDIDMNDYDDIRTCCQEKTICEKCWLYVTVAIRLIDTSLRQDFGFKHILW 141
Query: 511 VFSGRRGIHCWVSDYEARTLDSPGRGAIADYLCLIVGGENQSKKVHL---GNEN---LHS 672
++SGRRG+HCWV D +AR L S R AI DYL L+ G EN+ KKV+L N+N H
Sbjct: 142 LYSGRRGVHCWVCDTKARLLPSEARTAIIDYLTLVTGNENRKKKVNLKTSNNQNGIKSHP 201
Query: 673 SIRRALNIIDKYFEQLLXDQE 735
I R NI +YF+Q+L +Q+
Sbjct: 202 FIDRCFNICMQYFDQILENQQ 222
>UniRef50_Q24HY6 Cluster: DNA primase, eukaryotic-type, small
subunit, putative family protein; n=1; Tetrahymena
thermophila SB210|Rep: DNA primase, eukaryotic-type,
small subunit, putative family protein - Tetrahymena
thermophila SB210
Length = 399
Score = 190 bits (462), Expect = 4e-47
Identities = 93/222 (41%), Positives = 133/222 (59%), Gaps = 5/222 (2%)
Frame = +1
Query: 85 DMLPTYYARQFPQNIFCRWLACGSSPQP--LCNRELSFTLADDVYLRYLSISHQKDLQTL 258
D+L YY FP + +WL+ RE SFTL ++VYLRY + +++ +
Sbjct: 21 DLLEEYYRSYFPVSQMVQWLSYPQDGDDTYFTRREFSFTLQNEVYLRYQMYNSEREFKNA 80
Query: 259 LQKKCPHKLDVGAVYNTKPSVGRHDAVVISRELVFDIDLTDYDEIRTCCQEARVCEKCWK 438
L +K P K+D+GAVY+ +P D +E V DID+TDYD IRTCC +A++CEKCWK
Sbjct: 81 LLQKVPEKIDIGAVYD-RPGKKGDDIKAKEKEFVIDIDMTDYDHIRTCCSKAKICEKCWK 139
Query: 439 FMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIADYLCLIV 618
FM +AC++I K+L +DFGFQ +LWV+SGRRGIH WV D E R + R +I DYL ++V
Sbjct: 140 FMRVACDLISKSLDEDFGFQHVLWVYSGRRGIHAWVCDKEIRKANDYTRASIIDYLNILV 199
Query: 619 G---GENQSKKVHLGNENLHSSIRRALNIIDKYFEQLLXDQE 735
G + K L E H R A+ +++ + L ++E
Sbjct: 200 DNSIGSSYVKPSLLKMEKSHLIERNAMKQLNQKNDDLKAEKE 241
>UniRef50_Q9FJ26 Cluster: DNA primase; n=1; Arabidopsis
thaliana|Rep: DNA primase - Arabidopsis thaliana
(Mouse-ear cress)
Length = 407
Score = 188 bits (459), Expect = 9e-47
Identities = 87/187 (46%), Positives = 122/187 (65%), Gaps = 8/187 (4%)
Frame = +1
Query: 178 RELSFTLADDVYLRYLSISHQKDLQTLLQKKCPHKLDVGAVYNTKPSV-------GRHDA 336
RE SFTL +DVYLRY S + ++ ++ P+K+D+GAVY+ P G +
Sbjct: 50 REFSFTLENDVYLRYKSFKNASLMEAAIKSNFPYKIDIGAVYSVDPDKRHAYAQSGTNLF 109
Query: 337 VVISRELVFDIDLTDYDEIRTCCQEARVCEKCWKFMVIACEIIDKALKDDFGFQSILWVF 516
+ RELVFDID+TDYD++R CC A VC KCW M +A ++ID +L++DFGF+ ILWVF
Sbjct: 110 TPVERELVFDIDITDYDDVRYCCSGADVCSKCWPLMTVAIKVIDTSLREDFGFKHILWVF 169
Query: 517 SGRRGIHCWVSDYEARTLDSPGRGAIADYLCLIVGGENQSKKVHLGNENLHSSIRRA-LN 693
SGRRG+HCWV D +AR L + R A+A+Y + G EN +KKV L +LH + R+ ++
Sbjct: 170 SGRRGVHCWVCDAKARRLTNEQRSAVAEYFRVYKGNENNAKKVDLMGHSLHPFLARSYVD 229
Query: 694 IIDKYFE 714
I +FE
Sbjct: 230 FIKSFFE 236
>UniRef50_Q8MWR9 Cluster: DNA primase; n=1; Moneuplotes crassus|Rep:
DNA primase - Euplotes crassus
Length = 441
Score = 186 bits (454), Expect = 4e-46
Identities = 88/186 (47%), Positives = 124/186 (66%), Gaps = 4/186 (2%)
Frame = +1
Query: 178 RELSFTLADDVYLRYLSISHQKDLQTLLQKKCPHKLDVGAVYNTKP----SVGRHDAVVI 345
RE SFTL D +Y+RY ++++ + L +K P K+D+GAV+N P SV +
Sbjct: 59 REFSFTLEDGIYVRYNCFKNEEEFKQTLIEKSPEKIDIGAVFNMPPKNHSSVESRAFIPQ 118
Query: 346 SRELVFDIDLTDYDEIRTCCQEARVCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGR 525
+ELVFDID+TDYD++RTCC+ A VC KCW+FM IA +IIDKA+++DFG++ +LWVFSGR
Sbjct: 119 EKELVFDIDMTDYDDVRTCCEGANVCLKCWRFMSIATKIIDKAMREDFGYKHLLWVFSGR 178
Query: 526 RGIHCWVSDYEARTLDSPGRGAIADYLCLIVGGENQSKKVHLGNENLHSSIRRALNIIDK 705
RG+HCWV D R L + R AIA+YL + VG E S + + H +I RA +II +
Sbjct: 179 RGVHCWVCDPSTRKLTNEARSAIANYLTVHVGNEMGSTTAKI-DFVAHPAISRAKDIIKE 237
Query: 706 YFEQLL 723
F ++
Sbjct: 238 EFTDIM 243
>UniRef50_O14215 Cluster: DNA primase small subunit; n=19;
Ascomycota|Rep: DNA primase small subunit -
Schizosaccharomyces pombe (Fission yeast)
Length = 454
Score = 183 bits (445), Expect = 5e-45
Identities = 89/225 (39%), Positives = 134/225 (59%), Gaps = 7/225 (3%)
Frame = +1
Query: 82 SDMLPTYYARQFPQNIFCRWLACGSS-PQPLCNRELSFTLADDVYLRYLSISHQKDLQTL 258
S+ + YY FP +WL G +RE +FTL +D Y+RYLS S+ ++L+
Sbjct: 32 SETMIQYYRHLFPWKYLFQWLNHGPVVTNDFAHREFAFTLPNDAYIRYLSFSNWEELKKE 91
Query: 259 LQKKCPHKLDVGAVYNTKP----SVGRHDAVVISRELVFDIDLTDYDEIRTCCQEARVCE 426
CP + +VG VY+ P ++ + + +ELVFDID+TDYD++RTCC + +CE
Sbjct: 92 ALNLCPSRFEVGPVYSANPRDRKTIRKSTFHPLKKELVFDIDMTDYDDVRTCCSKTNICE 151
Query: 427 KCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIADYL 606
KCW F+ IA +++D +DFGF+ ILWV+SGRRGIH W+ D A +LD R IA YL
Sbjct: 152 KCWPFITIAVQVLDICFHEDFGFKHILWVYSGRRGIHAWICDEIACSLDDRSRRMIASYL 211
Query: 607 CLIVGG-ENQSKKVHLGNENLHSSIRRALNIIDKYFEQL-LXDQE 735
++VG + + ++ LH + R+LNI+ F ++ L DQ+
Sbjct: 212 QVVVGNPQGGVRLINNLKRPLHPHLTRSLNILKSAFVKIVLEDQD 256
>UniRef50_Q4P979 Cluster: DNA primase; n=1; Ustilago maydis|Rep: DNA
primase - Ustilago maydis (Smut fungus)
Length = 492
Score = 182 bits (444), Expect = 6e-45
Identities = 91/212 (42%), Positives = 131/212 (61%), Gaps = 14/212 (6%)
Frame = +1
Query: 97 TYYARQFPQNIFCRWL----ACGSSPQPLCNRELSFTLADDVYLRYLSISHQKDLQTLLQ 264
++Y R FP WL A ++ + +RE +FTL ++ YLRY S S +L+ +
Sbjct: 55 SFYRRLFPWKQLFSWLNHDLAHMAATKCFTHREFAFTLQNEAYLRYNSFSSADELKKEVC 114
Query: 265 KKCPHKLDVGAVYNTKP----SVGRHDAVVISRELVFDIDLTDYDEIRTCCQEARVCEKC 432
+ P + ++G VY KP +V + + RELVFDID+TDYDE+RTCC +C++C
Sbjct: 115 RLNPARFEIGPVYTAKPKDRKTVQKASFKPVQRELVFDIDMTDYDEVRTCCSGKGICKRC 174
Query: 433 WKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIADYLCL 612
W F+ +A +++D+AL+ DFGF+ +LWV+SGRRGIHCW+SD EA L R AI +L +
Sbjct: 175 WAFIAVAVQVLDEALRQDFGFKHLLWVYSGRRGIHCWISDKEAFQLADDARKAIVGWLEV 234
Query: 613 IVGGENQSKKVH------LGNENLHSSIRRAL 690
I GG NQ KKV G +LH S+RRA+
Sbjct: 235 IKGGANQVKKVDAGWMGGAGGRSLHPSLRRAI 266
>UniRef50_Q7KQM1 Cluster: DNA primase small subunit; n=12;
Plasmodium|Rep: DNA primase small subunit - Plasmodium
falciparum (isolate 3D7)
Length = 452
Score = 180 bits (439), Expect = 3e-44
Identities = 92/252 (36%), Positives = 147/252 (58%), Gaps = 21/252 (8%)
Frame = +1
Query: 46 VKMIGEHNENILSDM-LPTYYARQFPQNIFCRWLACGSS----------PQPLCNRELSF 192
++++G+ ++I+++ L YY P N WL + P RE SF
Sbjct: 3 MEIVGDIKDSIVNENDLIFYYRSLCPINDLYNWLNYKNDIKGKYTKLNDPHFFSKREFSF 62
Query: 193 TLA------DDVYLRYLSISHQKDLQT-LLQKKCPHKLDVGAVYNTKPSVGRHDAVV--- 342
T +++Y+R+LS S+ ++ + LL P K D+GA+YN S +
Sbjct: 63 TCKKSDQGKEEIYIRWLSFSNPEEFKNKLLSDLVPIKFDIGAIYNFPVSQKDQKGDIFLP 122
Query: 343 ISRELVFDIDLTDYDEIRTCCQEARVCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSG 522
+ +EL+FDID+ DYD+IRTCC + +VC+ CWKF+ +A ++D AL++DF F+ ILWV+SG
Sbjct: 123 VQKELIFDIDMNDYDDIRTCCTDKKVCKLCWKFLTVAIVLLDTALREDFSFEHILWVYSG 182
Query: 523 RRGIHCWVSDYEARTLDSPGRGAIADYLCLIVGGENQSKKVHLGNENLHSSIRRALNIID 702
RRGIHCWV+D R + R A+ADYL ++ G + + KKV + ++ + RA +I
Sbjct: 183 RRGIHCWVADESCRYYTTDARAALADYLNILSGSDTKKKKVSIWGKDKYPMFERAFDICY 242
Query: 703 KYFEQLLXDQEF 738
KYF+ L+ +Q+F
Sbjct: 243 KYFDVLMEEQDF 254
>UniRef50_Q5KH10 Cluster: DNA primase; n=4; Agaricomycotina|Rep: DNA
primase - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 429
Score = 180 bits (437), Expect = 4e-44
Identities = 90/226 (39%), Positives = 135/226 (59%), Gaps = 10/226 (4%)
Frame = +1
Query: 88 MLPTYYARQFPQNIFCRWLACGSSPQPL-CNRELSFTLADDVYLRYLSISHQKDLQTLLQ 264
++ +Y R FP WL P L +RE +FTLA DVYLRY S ++ + + +
Sbjct: 20 VMQLFYRRLFPYRPLYLWLNQEQIPSKLFTHREFAFTLAGDVYLRYQSFNNVDEFKASIA 79
Query: 265 KKCPHKLDVGAVYNTKPSVGRHDAVVI----SRELVFDIDLTDYDEIRTCCQEARVCEKC 432
+ P + ++G Y+ +P + A RELVFDID+TDYDEIRTCC + +C++C
Sbjct: 80 RHIPSRFEIGPQYSARPKDRKTLASGALQPQRRELVFDIDMTDYDEIRTCCTDKTICKRC 139
Query: 433 WKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIADYLCL 612
W F+ A +++D +L++ FGF+ +LWV+SGRRGIHCW+SD A L R A+ +L +
Sbjct: 140 WGFIAAAVKVLDHSLRETFGFKHLLWVYSGRRGIHCWISDQSALDLTDDQRRALVTFLEV 199
Query: 613 IVGGENQSKKVHL----GNENLHSSIRRALNIIDKYFEQL-LXDQE 735
I GG+ QSKKV++ G+ LH + AL+ + F L + DQ+
Sbjct: 200 IKGGKEQSKKVNVRGPTGDAALHPFLSEALDTLKPLFSSLCIYDQD 245
>UniRef50_Q4UFH5 Cluster: DNA primase small subunit, putative; n=3;
Piroplasmida|Rep: DNA primase small subunit, putative -
Theileria annulata
Length = 397
Score = 173 bits (421), Expect = 4e-42
Identities = 96/224 (42%), Positives = 133/224 (59%), Gaps = 11/224 (4%)
Frame = +1
Query: 100 YYARQFPQNIFCRWLACGSSPQPLCNRELSFTL-------ADDVYLRYLSI-SHQKDLQT 255
YY P RW+ P L RE+S TL A ++YLR+ + S + +T
Sbjct: 17 YYKNFCPIKDLVRWIGY-EDPSILKRREISLTLHRGDTTNATEIYLRWQTFESFESVFET 75
Query: 256 LLQK-KCPHKLDVGAVYNTKPSVGR--HDAVVISRELVFDIDLTDYDEIRTCCQEARVCE 426
L P K D+GA+Y+ K S+ + D + RE+VFDID+ DYDE RTCC + +VC
Sbjct: 76 LCNSDSVPFKFDIGAIYSNKISLMQLSGDFRPVEREIVFDIDMDDYDEFRTCCSDKKVCN 135
Query: 427 KCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIADYL 606
KCW+++ IA E+I LK+DFGF ++LWV+SGRRGIHCWV D AR L + GR +I +YL
Sbjct: 136 KCWRYIKIAVELITITLKEDFGFVNVLWVYSGRRGIHCWVCDKTARQLPTEGRISIIEYL 195
Query: 607 CLIVGGENQSKKVHLGNENLHSSIRRALNIIDKYFEQLLXDQEF 738
LI G +KKV+L + H + RA +I + F+ LL +Q F
Sbjct: 196 NLISDG--FAKKVNLYAIDKHPLVLRAFHICYRNFKHLLAEQNF 237
>UniRef50_Q00WX0 Cluster: DNA primase; n=2; Ostreococcus|Rep: DNA
primase - Ostreococcus tauri
Length = 452
Score = 167 bits (407), Expect = 2e-40
Identities = 88/230 (38%), Positives = 134/230 (58%), Gaps = 16/230 (6%)
Frame = +1
Query: 100 YYARQFPQNIFCRWLACGSSPQPLC-------NRELSFTLADD-----VYLRYLSISHQK 243
YY +P +WL+ G+ + RE F L + ++ RY
Sbjct: 55 YYRNFYPAEALFKWLSHGNDERHAKADKTYAGKREFCFVLDKENGDGEIFCRYQCFEDAG 114
Query: 244 DLQTLLQKKCPHKLDVGAVYNTKPSVGRHDAVV--ISRELVFDIDLTDYDEIRTCCQEAR 417
++ K P +++ G V N KP+ RH + + RELVFDID+TDYD++RTCC++A+
Sbjct: 115 RFAREVRSKNPARIEFGPVMNAKPA-HRHSVKLHSVERELVFDIDMTDYDDVRTCCKDAQ 173
Query: 418 VCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIA 597
+C KCW M IA +I+D L+ DFGF+ +LWV+SGRRG+HCWVSD AR L R A+A
Sbjct: 174 ICGKCWPLMTIAIKILDAGLRRDFGFKHLLWVYSGRRGVHCWVSDERARKLSDEARAAVA 233
Query: 598 DYLCLIVGGENQSKKVHLGNENLHSSIRRAL-NIIDKYF-EQLLXDQEFL 741
+Y +V G+ +S++V+ N +H S++RA +++ KY+ E L +Q L
Sbjct: 234 EYFA-VVKGQGKSRRVYSINP-MHPSVKRAYDDVLKKYWIETYLPEQRIL 281
>UniRef50_A5DB56 Cluster: DNA primase; n=5; Saccharomycetales|Rep:
DNA primase - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 464
Score = 167 bits (405), Expect = 3e-40
Identities = 84/224 (37%), Positives = 128/224 (57%), Gaps = 6/224 (2%)
Frame = +1
Query: 82 SDMLPTYYARQFPQNIFCRWLACGSSP-QPLCNRELSFTLADDVYLRYLSISHQKDLQTL 258
SDML +Y R P +WL P + RE ++ Y RY S S+ ++ +
Sbjct: 25 SDML-FFYQRLLPFRQIFQWLNHSPKPSKDFTMREFAYEYRTGAYQRYNSFSNLEEFKKS 83
Query: 259 LQKKCPHKLDVGAVYNTKPS----VGRHDAVVISRELVFDIDLTDYDEIRTCCQEARVCE 426
+ + P + +VGAVY+ P + + +++ELVFDIDLTDYDEIRTCC +C+
Sbjct: 84 VVQANPTRFEVGAVYSVNPKERKRLPKQALKPLAKELVFDIDLTDYDEIRTCCSGTDICK 143
Query: 427 KCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIADYL 606
KCW+F+ +A +I+D AL++DFGF ++WVFSGRRG HCWVSD AR LD R +I +YL
Sbjct: 144 KCWRFIQVAIKILDAALREDFGFNRLIWVFSGRRGAHCWVSDARARCLDETTRKSIVEYL 203
Query: 607 CLIVGGEN-QSKKVHLGNENLHSSIRRALNIIDKYFEQLLXDQE 735
++ N Q K + H + R+ +++ F ++ ++
Sbjct: 204 DVLGSRLNRQGKNLLSLKRPFHPHVERSFDLLKNEFVDIILKEQ 247
>UniRef50_P10363 Cluster: DNA primase small subunit; n=6;
Saccharomycetales|Rep: DNA primase small subunit -
Saccharomyces cerevisiae (Baker's yeast)
Length = 409
Score = 164 bits (399), Expect = 2e-39
Identities = 80/223 (35%), Positives = 125/223 (56%), Gaps = 5/223 (2%)
Frame = +1
Query: 82 SDMLPTYYARQFPQNIFCRWLACGSSP-QPLCNRELSFTLADDVYLRYLSISHQKDLQTL 258
SDM YY +P WL P + + NRE + Y RY S + +D +
Sbjct: 13 SDM-EYYYKSLYPFKHIFNWLNHSPKPSRDMINREFAMAFRSGAYKRYNSFNSVQDFKAQ 71
Query: 259 LQKKCPHKLDVGAVYNTKP----SVGRHDAVVISRELVFDIDLTDYDEIRTCCQEARVCE 426
++K P + ++GA+YN P ++ + + + +ELVFDID+ DYD RTCC A+VC
Sbjct: 72 IEKANPDRFEIGAIYNKPPRERDTLLKSELKALEKELVFDIDMDDYDAFRTCCSGAQVCS 131
Query: 427 KCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIADYL 606
KCWKF+ +A +I + AL++DFG++ +WVFSGRRG HCWVSD AR L R + DY+
Sbjct: 132 KCWKFISLAMKITNTALREDFGYKDFIWVFSGRRGAHCWVSDKRARALTDVQRRNVLDYV 191
Query: 607 CLIVGGENQSKKVHLGNENLHSSIRRALNIIDKYFEQLLXDQE 735
++ N K++ L H + R+L + +F ++ +++
Sbjct: 192 -NVIRDRNTDKRLAL-KRPYHPHLARSLEQLKPFFVSIMLEEQ 232
>UniRef50_Q6CF04 Cluster: DNA primase; n=1; Yarrowia lipolytica|Rep:
DNA primase - Yarrowia lipolytica (Candida lipolytica)
Length = 441
Score = 162 bits (394), Expect = 7e-39
Identities = 79/217 (36%), Positives = 126/217 (58%), Gaps = 6/217 (2%)
Frame = +1
Query: 91 LPTYYARQFPQNIFCRWLACGS-SPQPLCNRELSFTLADDVYLRYLSISHQKDLQTLLQK 267
L +Y+R FP RWL + + RE +FTL + YLR+ S + +++ ++ +
Sbjct: 35 LGLFYSRFFPFKTLHRWLNHSPRNGRDFAYREFAFTLRNGAYLRFNSFAEEREFKSRVDD 94
Query: 268 KCPHKLDVGAVYNTKPSVG---RHDAVV-ISRELVFDIDLTDYDEIRTCCQEARVCEKCW 435
P + ++GAVY+ P R D +S+ELVFDID+ DYD+ RTCC A VC KCW
Sbjct: 95 LVPERFEIGAVYSHSPKDRKKLRKDVFKPVSKELVFDIDMDDYDKFRTCCSGASVCNKCW 154
Query: 436 KFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIADYLCLI 615
+++ +A ++++ ALK+DFG++ I+WVFSGRRG H WVSD +AR L+ R + Y+
Sbjct: 155 RYVQVAVKMVNSALKEDFGYKHIMWVFSGRRGAHAWVSDKKARDLNDRQRSTVVSYIAAF 214
Query: 616 VGGENQSKKVHLG-NENLHSSIRRALNIIDKYFEQLL 723
++S + LH ++R L+I F +++
Sbjct: 215 GDATDKSAAGNSSLRRPLHPHLQRCLDIATTVFNEVV 251
>UniRef50_Q4QBV6 Cluster: DNA primase small subunit, putative; n=6;
Trypanosomatidae|Rep: DNA primase small subunit,
putative - Leishmania major
Length = 451
Score = 151 bits (367), Expect = 1e-35
Identities = 79/189 (41%), Positives = 110/189 (58%), Gaps = 5/189 (2%)
Frame = +1
Query: 169 LCNRELSFTLADDVYLRYLSISHQKDLQTLLQKKCPHKLDVGAVYNTKPSV--GRHDAVV 342
L RE FTL D++ R+ S ++L+ L + P K+DVGAVYN +P+ G +
Sbjct: 100 LARREFCFTLIGDIFTRFRSYRSSEELRAELVRCFPEKIDVGAVYNIRPNQKQGLANVFP 159
Query: 343 ISRELVFDIDLTDYDEIRTCCQEARVCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSG 522
+ RELVFDID++DYD +R+CC +C CW +M A ++ L+DDFGF+ IL VFSG
Sbjct: 160 VERELVFDIDMSDYDNVRSCCSGKSICSYCWAWMSCAAHVLHTVLRDDFGFKYILPVFSG 219
Query: 523 RRGIHCWVSDYEARTLDSPGRGAIADYLCLIVGGENQSKKV-HLGNENL-HSSIRRALNI 696
RRGIH WV D AR + + R A+ YL ++ +S V L N L H +IR L
Sbjct: 220 RRGIHLWVCDRRARRMTNDERTALVGYLTVVAPKTLRSTIVADLANHRLIHPTIRHVLRT 279
Query: 697 -IDKYFEQL 720
+D+ F L
Sbjct: 280 QLDRAFTSL 288
>UniRef50_A0EG74 Cluster: DNA primase; n=1; Paramecium
tetraurelia|Rep: DNA primase - Paramecium tetraurelia
Length = 410
Score = 148 bits (358), Expect = 2e-34
Identities = 90/233 (38%), Positives = 120/233 (51%), Gaps = 19/233 (8%)
Frame = +1
Query: 100 YYARQFPQNIFCRWLACGSSPQP----LCNRELSFTLADD---VYLRYLSISHQKDLQTL 258
YY FP + WL+ QP RE SF + D Y RY + LQ
Sbjct: 16 YYKHLFPIQMIVDWLSYAKDNQPELRYFSRREFSFERSIDGETFYQRYQQFQNAYGLQKF 75
Query: 259 L-------QKKCPHKLDVGAVYNTKPSVGRHDAVVISRELVFDIDLTDYDEIRTCCQEAR 417
L Q K D+GAV++ P G + +E+V DID+ YDE+RTCCQ A+
Sbjct: 76 LLDNKQNDQTSTLIKYDIGAVFDKLPKKGEK-LKAMEKEIVIDIDMDAYDEVRTCCQGAK 134
Query: 418 VCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIA 597
+CEKCWKF+ +AC+I+ AL DFG + IL V+SGRRGIH WV D R + R AI
Sbjct: 135 ICEKCWKFLQVACDILRPALFQDFGLEHILAVYSGRRGIHLWVCDSHIRKSTNEVRSAII 194
Query: 598 DYLCLIVGGENQSKKVHLGN----ENLHSSIRRALNIIDKYFEQ-LLXDQEFL 741
YL + G + + + E LH SI+RA I ++F+Q +L DQ L
Sbjct: 195 GYLNINTGNADAEEIIREVKQEKVEKLHPSIQRAYFIAQQFFKQIILIDQNSL 247
>UniRef50_UPI000049921B Cluster: DNA primase small subunit; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: DNA primase small
subunit - Entamoeba histolytica HM-1:IMSS
Length = 365
Score = 146 bits (354), Expect = 5e-34
Identities = 75/215 (34%), Positives = 119/215 (55%), Gaps = 1/215 (0%)
Frame = +1
Query: 100 YYARQFPQNIFCRWLACGSSPQPLCNRELSFTLADDVYLRYLSISHQKDLQTLLQKKCPH 279
YY + FP F +W+ RELSFT+ D+ Y+RY ++L+ L++K P
Sbjct: 14 YYDKSFPVETFYKWITRNKKYSD--TRELSFTMFDESYIRYQHFKSSEELKRKLKEKVPI 71
Query: 280 KLDVGAVYNTKPSVGRHDAVVISRELVFDIDLTDYDEIRTCCQEARVCEKCWKFMVIACE 459
K D+GAV++ K +G + ++ RE V DID+ +Y+++R CCQ +CEKCW +V A +
Sbjct: 72 KFDIGAVFD-KLLIGVTNTPLL-REFVIDIDMDEYNDVRYCCQGTNICEKCWTLLVAAVQ 129
Query: 460 IIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIADYLCLI-VGGENQS 636
+++ L + FGF+ IL VFSGRRGIH WV D A + R + YL L N
Sbjct: 130 VLNYILHEQFGFKHILNVFSGRRGIHIWVCDDSAMEMTDTLRMNVVQYLNLFEAKNTNSL 189
Query: 637 KKVHLGNENLHSSIRRALNIIDKYFEQLLXDQEFL 741
+ ++ H+ + I++ F++ L D++ L
Sbjct: 190 NESYVVIPGRHALFDDSYQILEPLFKKYLQDEQIL 224
>UniRef50_Q8SRD5 Cluster: DNA primase; n=1; Encephalitozoon
cuniculi|Rep: DNA primase - Encephalitozoon cuniculi
Length = 298
Score = 133 bits (321), Expect = 5e-30
Identities = 70/173 (40%), Positives = 101/173 (58%), Gaps = 1/173 (0%)
Frame = +1
Query: 88 MLPTYYARQFPQNIFCRWLACGSSPQPLCNRELSFTLADDVYLRYLSISHQKDLQTLLQK 267
++ TYY FP ++ R L S RE+SF L Y+R+L+ + + L
Sbjct: 24 LMRTYYRTLFPLDLMFRCLRIDES------REISFGLGSGGYIRFLTFRTADEFRKKLMG 77
Query: 268 KCPHKLDVGAVYNTKPSVGRHD-AVVISRELVFDIDLTDYDEIRTCCQEARVCEKCWKFM 444
P K+DVGA+Y +P+ +H + V+ +ELVFD+DLTDY R CC E VC +C +
Sbjct: 78 IAPDKIDVGAIYRDRPT--KHSISRVVGKELVFDVDLTDYP--RECCSEKLVCNRCLVLI 133
Query: 445 VIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIADY 603
A EI++ +L+++FGF+ + +VFSGRRG+HCWV D EA L RG I Y
Sbjct: 134 KAAVEILNYSLREEFGFKDVGFVFSGRRGVHCWVFDDEALELSDLERGEIVKY 186
>UniRef50_A2G330 Cluster: DNA primase; n=1; Trichomonas vaginalis
G3|Rep: DNA primase - Trichomonas vaginalis G3
Length = 362
Score = 126 bits (304), Expect = 6e-28
Identities = 63/180 (35%), Positives = 104/180 (57%), Gaps = 4/180 (2%)
Frame = +1
Query: 85 DMLPTYYARQFPQNIFCRWLACGSSPQPLCNRELSFTLADDVYLRYLSISHQKDLQTLLQ 264
++L YY+ +FP +W++ G + +PL NRE F D+ ++R+ ++ L+ L
Sbjct: 7 ELLRKYYSDKFPLEDIKQWISYGGN-EPLENRECGFFFDDEKFMRWQTVDV---LRRLAL 62
Query: 265 KKCPHKLDVGAVYNTKPSVGRHDAV----VISRELVFDIDLTDYDEIRTCCQEARVCEKC 432
P ++++G VY ++ + + S+EL+FD+D D+ +I+ CC ++ +CEKC
Sbjct: 63 ANPPQRMEIGPVYTHPIAIRQQQSPGEFRPKSKELIFDLDADDFKDIKCCCGDSEICEKC 122
Query: 433 WKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIADYLCL 612
W +M A + + L+ +FGF+ I VFSGRRGIH WV D +AR L + R I YL L
Sbjct: 123 WPYMHCAIDCLTTILRTNFGFKKIFPVFSGRRGIHIWVCDKKARELSAAVRDKIVHYLNL 182
>UniRef50_Q54MM7 Cluster: DNA primase; n=1; Dictyostelium discoideum
AX4|Rep: DNA primase - Dictyostelium discoideum AX4
Length = 409
Score = 122 bits (293), Expect = 1e-26
Identities = 68/192 (35%), Positives = 103/192 (53%), Gaps = 20/192 (10%)
Frame = +1
Query: 91 LPTYYARQFPQNIFCRWLACGS-------SPQPLCNRELSFTL---ADDVYLRYLSISHQ 240
L YY + FP ++ WL S + RE S + + +R S +
Sbjct: 22 LREYYDKLFPFDLLYDWLTINSINEKEEDKKRAFERREFSVRINKVSSSFVIRNKSFNRV 81
Query: 241 KDLQTLLQKK--------CPHKLDVGAVYNTKPSVGR--HDAVVISRELVFDIDLTDYDE 390
+DL+ L+ + P +LD+G + + +PS D +S+ELVFDID+ DY+
Sbjct: 82 EDLKEFLKGRQNIDGVYEVPERLDIGPICSWEPSKKATVSDYQPVSKELVFDIDVDDYNP 141
Query: 391 IRTCCQEARVCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTL 570
IR CC +CEKCW F+ ++ E ID L++ FGFQ I++VFSGRRG+H WVSD A+ L
Sbjct: 142 IRVCCSSTSLCEKCWGFLAVSAEFIDNYLRECFGFQQIMYVFSGRRGLHIWVSDRAAQHL 201
Query: 571 DSPGRGAIADYL 606
R +I +++
Sbjct: 202 TRENRASILNHI 213
>UniRef50_UPI00004983C2 Cluster: DNA primase small subunit; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: DNA primase small
subunit - Entamoeba histolytica HM-1:IMSS
Length = 372
Score = 117 bits (281), Expect = 3e-25
Identities = 64/208 (30%), Positives = 98/208 (47%), Gaps = 1/208 (0%)
Frame = +1
Query: 115 FPQNIFCRWLACGSSPQPLCNRELSFTLADDVYLRYLSISHQKDLQTLLQKKCPHKLDVG 294
FP +F +W+ REL+ + + RYL + DL L + P ++++G
Sbjct: 36 FPSKLFYQWVTRNGKYSQ--TRELAAFKTNSFFNRYLHFNSSYDLSNYLSRYVPERIEIG 93
Query: 295 AVYNTKPSVGRHDAVVISRELVFDIDLTDYDEIRTCCQEARVCEKCWKFMVIACEIIDKA 474
+++ + A + RE V DID+ DYD+IR CC +VC+KCW M A ++I
Sbjct: 94 PIFDHLLFNKTNTATM--REFVIDIDIDDYDDIRYCCSSTQVCKKCWILMSCAAKVIHHI 151
Query: 475 LKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIADYLCLIVGG-ENQSKKVHL 651
++ FG + IL VFSGRRGIH W+ D +A + R I Y L N+ +
Sbjct: 152 FQEQFGMKHILNVFSGRRGIHFWICDEQALHFNEQMRTYITKYFSLFTNQCTNKDNHPII 211
Query: 652 GNENLHSSIRRALNIIDKYFEQLLXDQE 735
+ I++ YFE QE
Sbjct: 212 DIHEEYPLYNEVYQILEPYFEDYCEKQE 239
>UniRef50_Q7QRZ8 Cluster: DNA primase; n=1; Giardia lamblia ATCC
50803|Rep: DNA primase - Giardia lamblia ATCC 50803
Length = 449
Score = 110 bits (265), Expect = 3e-23
Identities = 73/233 (31%), Positives = 112/233 (48%), Gaps = 12/233 (5%)
Frame = +1
Query: 79 LSDMLPTYYARQFPQNIFCRWLACGSSPQPLCNRELSF---TLADDVYL-RYLSISHQKD 246
L+ YY +P WL S RE S+ T D+ ++ R+ IS +
Sbjct: 8 LAPAYAVYYENYYPYEEIVEWLTYHGSVLTQ-RREWSYEIITATDETFVTRFREISDAEQ 66
Query: 247 LQTLLQ------KKCPHKLDVGAVYNTKPSVGRH--DAVVISRELVFDIDLTDYDEIRTC 402
L+++L+ + KLD+G VY + S + + RELVFDID DYD IRTC
Sbjct: 67 LRSILRFSSKTLEDFKLKLDIGPVYTSDMSQRKTQPEFAPCERELVFDIDAGDYDRIRTC 126
Query: 403 CQEARVCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPG 582
C +C+KCW+FM +A ++ + GF +VFSGRRG+HCW+ D AR L
Sbjct: 127 CAGPAMCDKCWRFMELAVPLLILFCR-VHGFNDYFFVFSGRRGLHCWICDARARKLSKDS 185
Query: 583 RGAIADYLCLIVGGENQSKKVHLGNENLHSSIRRALNIIDKYFEQLLXDQEFL 741
R ++ D +I + + N + +I ++F Q+L +Q +L
Sbjct: 186 RKSMVDAFNIISIDTGSVLRESYDHSNWLCRLIHD-HICIRFFSQMLEEQNWL 237
>UniRef50_UPI000155BA73 Cluster: PREDICTED: similar to hCG2016482,
partial; n=1; Ornithorhynchus anatinus|Rep: PREDICTED:
similar to hCG2016482, partial - Ornithorhynchus
anatinus
Length = 224
Score = 97.5 bits (232), Expect = 3e-19
Identities = 44/87 (50%), Positives = 58/87 (66%), Gaps = 1/87 (1%)
Frame = +1
Query: 484 DFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIADYLCLIVGGENQSKKVHLGNEN 663
DFGFQ LWV+SGRRG+HCWV D AR L R I +YL L+ GG KKVH+G E
Sbjct: 1 DFGFQHRLWVYSGRRGVHCWVCDASARKLSPAVRSGIVEYLSLVKGGREMVKKVHVG-EK 59
Query: 664 LHSSIRRALNIIDKYFEQLLXD-QEFL 741
+H +RR++++++ YFE D Q+FL
Sbjct: 60 VHPFVRRSVSLVEDYFEDYAVDGQDFL 86
>UniRef50_A2Y3N8 Cluster: DNA primase; n=4; Oryza sativa|Rep: DNA
primase - Oryza sativa subsp. indica (Rice)
Length = 397
Score = 72.5 bits (170), Expect = 1e-11
Identities = 39/110 (35%), Positives = 63/110 (57%), Gaps = 14/110 (12%)
Frame = +1
Query: 82 SDMLPTYYARQFPQNIFCRWLACGSSPQ-PLCN------RELSFTLADDVYLRYLSISHQ 240
+D L YY + FP F +WL+ G+ + P C+ RE SFTL +D+Y+R+ S
Sbjct: 31 ADYLRIYYGKLFPHVDFFKWLSYGNDGKHPGCDQSYVGRREFSFTLENDIYVRFQSFDSV 90
Query: 241 KDLQTLLQKKCPHKLDVGAVYNTKPS-------VGRHDAVVISRELVFDI 369
+++ +++KCP K+D+G VY+ P+ G + V + REL+FDI
Sbjct: 91 AEMENSIKEKCPFKIDIGPVYSVDPAKRHAYAQSGNNVFVPVERELIFDI 140
Score = 36.3 bits (80), Expect = 0.79
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Frame = +1
Query: 568 LDSPGRGAIADYLCLI-VGGENQSKKVHLGNENLHSSIRRA-LNIIDKYFE-QLLXDQE 735
L++ R AIADY + VGGEN KKV L LH + R+ +++ +FE +LL Q+
Sbjct: 154 LNNEQRAAIADYFRVYKVGGENTMKKVSLTGAVLHPFLARSYTDVLKGFFEDKLLLSQQ 212
>UniRef50_UPI000155BDB7 Cluster: PREDICTED: similar to retinol
dehydrogenase similar protein, partial; n=1;
Ornithorhynchus anatinus|Rep: PREDICTED: similar to
retinol dehydrogenase similar protein, partial -
Ornithorhynchus anatinus
Length = 192
Score = 58.4 bits (135), Expect = 2e-07
Identities = 26/44 (59%), Positives = 34/44 (77%)
Frame = +1
Query: 175 NRELSFTLADDVYLRYLSISHQKDLQTLLQKKCPHKLDVGAVYN 306
+RE SFTL DDVY+RY S S Q +L+ +QK P+K+DVGAVY+
Sbjct: 147 HREFSFTLKDDVYIRYQSFSTQAELEKEMQKLSPYKIDVGAVYS 190
>UniRef50_O29516 Cluster: Probable DNA primase small subunit; n=2;
Archaeoglobus fulgidus|Rep: Probable DNA primase small
subunit - Archaeoglobus fulgidus
Length = 335
Score = 56.0 bits (129), Expect = 9e-07
Identities = 52/191 (27%), Positives = 84/191 (43%), Gaps = 5/191 (2%)
Frame = +1
Query: 160 PQPLCNRELSFT----LADDVYLRYLSISHQKDLQTLLQKKCPHKLDVGAVYNTKPSVGR 327
P+ NRE +F L D V R++S + D + + P + + Y +P+ +
Sbjct: 23 PRKFKNREFAFVPLELLPDFVMHRHISFRSETDFRAYILSNVPAHIYFSSAYYERPAEDK 82
Query: 328 -HDAVVISRELVFDIDLTDYDEIRTCCQEARVCEKCWKFMVIACEIIDKALKDDFGFQSI 504
+ + +L+FDID D+ ++ A+ EK + + + L+ DFG + +
Sbjct: 83 MENKGWLGADLIFDID-ADHLPVK-----AQSFEKALEMAKREIKKLTAVLRADFGIRDM 136
Query: 505 LWVFSGRRGIHCWVSDYEARTLDSPGRGAIADYLCLIVGGENQSKKVHLGNENLHSSIRR 684
FSG RG H V D E +L S R I DYL L N K V ++ +R
Sbjct: 137 KIYFSGGRGYHVHVHDEEFLSLGSAERREIVDYLRL-----NSPKIVVEDRFANSNAAKR 191
Query: 685 ALNIIDKYFEQ 717
LN + K E+
Sbjct: 192 VLNYLRKKLEE 202
>UniRef50_A3DM85 Cluster: DNA primase; n=1; Staphylothermus marinus
F1|Rep: DNA primase - Staphylothermus marinus (strain
ATCC 43588 / DSM 3639 / F1)
Length = 377
Score = 52.0 bits (119), Expect = 1e-05
Identities = 55/179 (30%), Positives = 80/179 (44%), Gaps = 28/179 (15%)
Frame = +1
Query: 160 PQPLCNRELSF-TLADDVYLRYLSISHQKDLQT-LLQKKCPHKLDVGAVYNTKPSVGRHD 333
P + RE++ +L D+ Y+R+LS L +L +K P L + Y PSV + +
Sbjct: 28 PLYIHKREIAIHSLEDEAYIRHLSFPSITHLYNFILNEKTPLHLYYSSAYYESPSVNKME 87
Query: 334 AVV-ISRELVFDIDLTDY---DEIRTCCQEA--------RVCEKCWKFMVI----ACEII 465
I +L+FD+D Y D+I + C E + C K VI E I
Sbjct: 88 LKGWIGSDLMFDLDSDHYPGCDKILSICIEENTIYDGKIKTCPKTESKPVIHPLIKTECI 147
Query: 466 DKA----------LKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIADYLCL 612
KA L+D+ G ++I FSG RG H V D + L+S R IA Y+ L
Sbjct: 148 QKAYRDALRIKYILEDELGLKNIKIYFSGNRGFHVKVIDEKIWDLESDERREIASYISL 206
>UniRef50_Q0W8M0 Cluster: DNA primase, small subunit; n=2;
Archaea|Rep: DNA primase, small subunit - Uncultured
methanogenic archaeon RC-I
Length = 400
Score = 50.0 bits (114), Expect = 6e-05
Identities = 44/156 (28%), Positives = 64/156 (41%), Gaps = 7/156 (4%)
Frame = +1
Query: 160 PQPLCNRELSFTLADDVY----LRYLSISHQKDLQTLLQKKCP-HKLDVGAVYNTKPSVG 324
P L RE F ++ R+ + + + +L L+ P H A Y +
Sbjct: 25 PPGLAQREWGFIFHEETVGVAMRRHKAFNSEGELADYLRSMPPAHAYHSAAYYRHPQAPT 84
Query: 325 RHDAVVISRELVFDIDLTDYDEIRTCCQEARVCEKCWKFMVIACEIIDKALKDDFGFQS- 501
+ + +L+FD+D ++ E V +ID+ L DD GF+
Sbjct: 85 MQEKDWLGADLIFDLDADHLPGVKNMTYG----EMLDNVKVEIIRLIDEFLIDDLGFREK 140
Query: 502 -ILWVFSGRRGIHCWVSDYEARTLDSPGRGAIADYL 606
+ VFSG RG H V D RTL SP R I DYL
Sbjct: 141 DMDIVFSGGRGYHVHVRDERVRTLKSPERREIVDYL 176
>UniRef50_Q6L0W5 Cluster: Probable DNA primase small subunit; n=2;
Thermoplasmatales|Rep: Probable DNA primase small
subunit - Picrophilus torridus
Length = 370
Score = 49.6 bits (113), Expect = 8e-05
Identities = 39/152 (25%), Positives = 65/152 (42%), Gaps = 3/152 (1%)
Frame = +1
Query: 160 PQPLCNRELSFTLADDVYLRYLSISHQKDLQTLLQKKCPHKLDVGAVYNTKPSVGRHDAV 339
P + RE+ + +R+LS + +++++ +++ P L + Y KP R +
Sbjct: 23 PDLISKREIGYIPFSGTMIRHLSFRNHREIESFVKRNTPRHLYYSSAYYIKPDEKRMEKK 82
Query: 340 VIS-RELVFDIDLTDYDEIRTCCQEARVCEKCWKFMVIACEIIDKALKDDFGFQ--SILW 510
+ EL+FD+D E + E + +I+ DFGF SI
Sbjct: 83 IWEGAELIFDLDADHIPGSDKMTYEEILLEVKKHVSRLLNYLIN-----DFGFDDDSIKL 137
Query: 511 VFSGRRGIHCWVSDYEARTLDSPGRGAIADYL 606
FSG RG H V +LDS R I +Y+
Sbjct: 138 YFSGGRGYHVHVVSDRVYSLDSDARREIGNYI 169
>UniRef50_Q9YEZ8 Cluster: Probable DNA primase small subunit; n=1;
Aeropyrum pernix|Rep: Probable DNA primase small subunit
- Aeropyrum pernix
Length = 342
Score = 48.8 bits (111), Expect = 1e-04
Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 2/153 (1%)
Frame = +1
Query: 160 PQPLCNRELSFTLAD-DVYLRYLSISHQKDLQTLLQKKCPHKLDVG-AVYNTKPSVGRHD 333
P+ + RE +F L D DVY+R++ ++L + + ++ P A Y+ + +
Sbjct: 27 PRDIAYREFAFQLFDGDVYVRHIGFDSMEELLSYMAREAPKNAYYSVARYSLPTARSMEE 86
Query: 334 AVVISRELVFDIDLTDYDEIRTCCQEARVCEKCWKFMVIACEIIDKALKDDFGFQSILWV 513
+ EL+FDID+ D + C + + + C + +AL DFG S L+
Sbjct: 87 KGWLGSELMFDIDV---DSLEGCGEV--LGDSCLSRGYKQAVRLVEALYRDFGVPSTLY- 140
Query: 514 FSGRRGIHCWVSDYEARTLDSPGRGAIADYLCL 612
F+G RG H R L R IA Y L
Sbjct: 141 FTGNRGFHVLADCGWCRRLGREERREIARYFTL 173
>UniRef50_Q8ZTY1 Cluster: Probable DNA primase small subunit; n=4;
Pyrobaculum|Rep: Probable DNA primase small subunit -
Pyrobaculum aerophilum
Length = 312
Score = 48.0 bits (109), Expect = 2e-04
Identities = 40/146 (27%), Positives = 61/146 (41%), Gaps = 3/146 (2%)
Frame = +1
Query: 178 RELSFTLADDVYLRYLSISHQKDLQTLLQKKCPHKLDVGAVYNTKPSVGRHDAVV---IS 348
RE +F +R+ S +DL+ + +K P + A Y +P G D I
Sbjct: 25 REFAFQPFSGGMVRHKSFKSLEDLRKFVVEKTPRHIYHSAAYYERP--GEEDMERKGWIG 82
Query: 349 RELVFDIDLTDYDEIRTCCQEARVCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRR 528
+L+FDID D+ + C + V +C + + L + + VFSG R
Sbjct: 83 ADLIFDID-GDHLDTEACRESKIVSLRCLEDAREEANKLIDVLIQELDLKPTRIVFSGNR 141
Query: 529 GIHCWVSDYEARTLDSPGRGAIADYL 606
G H VS E L S R + +YL
Sbjct: 142 GFHIHVSSEEVMKLGSRERRELVNYL 167
>UniRef50_Q979L5 Cluster: Probable DNA primase small subunit; n=4;
Thermoplasma|Rep: Probable DNA primase small subunit -
Thermoplasma volcanium
Length = 333
Score = 47.6 bits (108), Expect = 3e-04
Identities = 38/152 (25%), Positives = 63/152 (41%), Gaps = 3/152 (1%)
Frame = +1
Query: 160 PQPLCNRELSFTLADDVYLRYLSISHQKDLQTLLQKKCPHKLDVGAVYNTKPSVGRH-DA 336
P + RE+ F + +R++ +S++ +L +L+ P + A Y KP + +
Sbjct: 27 PALITKREVGFMTFEGEIIRHMHLSNKFELNNMLRTTVPRHVYSSAAYYKKPDEKKMPEK 86
Query: 337 VVISRELVFDIDLTDYDEIRTCCQEARVCEKCWKFMVIACEIIDKALKDDFGF--QSILW 510
+ +L+FD+D E E +++K L D G + I
Sbjct: 87 IWEGADLIFDLDSDHLPGAEKMTYE----EMLNSIKEQTKRLVNKFLVSDLGISEKDIRI 142
Query: 511 VFSGRRGIHCWVSDYEARTLDSPGRGAIADYL 606
FSG RG H VS + L S R I DY+
Sbjct: 143 YFSGSRGYHVHVSSEDVYPLGSDARREITDYV 174
>UniRef50_Q9HPU3 Cluster: Probable DNA primase small subunit; n=6;
Halobacteriaceae|Rep: Probable DNA primase small subunit
- Halobacterium salinarium (Halobacterium halobium)
Length = 391
Score = 47.6 bits (108), Expect = 3e-04
Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 3/138 (2%)
Frame = +1
Query: 202 DDVYLRYLSISHQKDLQTLLQKKCPHKLDVGA-VYNTKPSVGRHDAVVISRELVFDIDLT 378
D +R+ S + + L++KCP + A Y+ + + +LVFD+D
Sbjct: 43 DTTMVRHKSTLDLGSMTSFLERKCPRHVYFSAGTYDAPGAATMDEKHWQGSDLVFDLDAD 102
Query: 379 DYDEIRTCCQE--ARVCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSD 552
+ T ++ A + KC ++ + +++ DFGF+ + FSG RG H V D
Sbjct: 103 HLPRV-TLGEDSYAEMLSKCKDALLRLLDFLER----DFGFEELTVTFSGGRGYHVHVRD 157
Query: 553 YEARTLDSPGRGAIADYL 606
L S R I DY+
Sbjct: 158 AGVYELGSEERREIVDYV 175
>UniRef50_A1RXU6 Cluster: DNA primase; n=1; Thermofilum pendens Hrk
5|Rep: DNA primase - Thermofilum pendens (strain Hrk 5)
Length = 389
Score = 47.2 bits (107), Expect = 4e-04
Identities = 54/197 (27%), Positives = 86/197 (43%), Gaps = 35/197 (17%)
Frame = +1
Query: 121 QNIFCRWLACGS--SPQPLCNRELSFTLADDV-YLRYLSISHQKDLQTLLQKKCPHKLDV 291
+ +F R+ A S +P L RE +F++ + +R+LS S +++L ++ P
Sbjct: 17 RGLFARYYARTSVEAPSELSKREFAFSMFNSTSMIRHLSFSTREELDDYIRVNVPQHAYY 76
Query: 292 GAVYNTKPSVGRH-DAVVISRELVFDIDL----TDYDEI--RTCCQEA--------RVCE 426
+ Y PS + + +LVFDID+ T ++ R CQ+ + C
Sbjct: 77 SSAYYQYPSAQEMGEKGWLGADLVFDIDVDHIPTPCKDLHDRWRCQDCGAEGWGFTKKCP 136
Query: 427 KC------W-KFMVIAC------EIID--KALKDDFGFQ--SILWVFSGRRGIHCWVSDY 555
C W K++ C E+I + L+DDFGF + FSG RG H V
Sbjct: 137 SCGSERLEWSKWVCSTCINVAREEMIKLVEILEDDFGFDRAEMRVAFSGHRGFHLHVESE 196
Query: 556 EARTLDSPGRGAIADYL 606
+ LD R I DY+
Sbjct: 197 AVKDLDQDARREITDYV 213
>UniRef50_Q2FPD1 Cluster: DNA primase; n=2; Methanomicrobiales|Rep:
DNA primase - Methanospirillum hungatei (strain JF-1 /
DSM 864)
Length = 388
Score = 46.4 bits (105), Expect = 7e-04
Identities = 43/159 (27%), Positives = 66/159 (41%), Gaps = 7/159 (4%)
Frame = +1
Query: 154 SSPQPLCNRELSFTLADDVY------LRYLSISHQKDLQTLLQKKCP-HKLDVGAVYNTK 312
S P + RE F DD Y R++ S ++Q ++ P H A Y T
Sbjct: 23 SPPSSVKEREFGFIFFDDRYPDDIRMRRHIGFSSGDEMQEYVKSLVPAHAYYSTAYYRTP 82
Query: 313 PSVGRHDAVVISRELVFDIDLTDYDEIRTCCQEARVCEKCWKFMVIACEIIDKALKDDFG 492
+ D + +L+FD+D D I EA + E+ +++D L D
Sbjct: 83 QAPTMGDKEWLGADLIFDLDA---DHIMRGSYEAML-ERIKGEAEKLLDVLDNELGIDM- 137
Query: 493 FQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIADYLC 609
++I VFSG RG H V + R + R + DY+C
Sbjct: 138 -RTIKLVFSGGRGYHVHVQELAFRDFEPAERRELVDYVC 175
>UniRef50_Q58249 Cluster: DNA primase; n=6; Methanococcales|Rep: DNA
primase - Methanococcus jannaschii
Length = 350
Score = 43.6 bits (98), Expect = 0.005
Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 6/144 (4%)
Frame = +1
Query: 160 PQPLCNRELSFTLADDVYLRYLSISHQKDLQTLLQKKCPHKLDVGAVYNTKP--SVGRHD 333
P+ + RE + V R LS ++++ + + K P Y P S G
Sbjct: 27 PEGIEYREFGYGYLKKVDNRNLSFKNEREYKDWVLKNAPMHFYKSLAYMLYPNKSGGASK 86
Query: 334 AVVISRELVFDIDLTDYDEIRTCCQEAR-VCEKCWKFMVI-ACEIIDKALKDDFGF--QS 501
+ REL FDID+ + + C E +C+ C + A +I++ L DFG +
Sbjct: 87 KGIFRRELAFDIDV---HKTKKCKHEDDWICKHCLEEAKNQAIYLIEEFLIPDFGLNEED 143
Query: 502 ILWVFSGRRGIHCWVSDYEARTLD 573
+ VFSG RG H ++ + + D
Sbjct: 144 LKIVFSGNRGYHIYIKPRDEKIRD 167
>UniRef50_A3CX73 Cluster: DNA primase; n=2; Methanomicrobiales|Rep:
DNA primase - Methanoculleus marisnigri (strain ATCC
35101 / DSM 1498 / JR1)
Length = 387
Score = 42.7 bits (96), Expect = 0.009
Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 7/157 (4%)
Frame = +1
Query: 160 PQPLCNRELSFTLAD---DVYLR-YLSISHQKDLQTLLQKKCP-HKLDVGAVYNTKPSVG 324
P L RE F D +V +R +++ + +++L ++ P H A Y T +
Sbjct: 25 PSSLEQREWGFIFFDAAAEVRMRRHMAFADREELGAYVKSLVPAHVYYSTAYYQTPSAPT 84
Query: 325 RHDAVVISRELVFDIDLTDYDEIRTCCQEARVCEKCWKFMVIACEIIDKALKDDFGFQ-- 498
++ +L+FD+D ARV E+ K + + L D+ GF
Sbjct: 85 MNEKHWAGADLIFDLDADHIVRGPYAMMLARVKEETEKLLAM--------LTDELGFDRS 136
Query: 499 SILWVFSGRRGIHCWVSDYEARTLDSPGRGAIADYLC 609
I FSG RG H V+D R S R I DY+C
Sbjct: 137 QIRLAFSGGRGYHIHVTDIGVRGWGSQERREIVDYVC 173
>UniRef50_Q9P9H1 Cluster: DNA primase small subunit; n=5;
Thermococcaceae|Rep: DNA primase small subunit -
Pyrococcus furiosus
Length = 347
Score = 41.1 bits (92), Expect = 0.028
Identities = 29/85 (34%), Positives = 41/85 (48%)
Frame = +1
Query: 352 ELVFDIDLTDYDEIRTCCQEARVCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRG 531
ELVFDID D R + VC C + + L+++ GF++I V+SG RG
Sbjct: 91 ELVFDIDAKDLPLKRCNHEPGTVCPICLEDAKELAKDTLIILREELGFENIHVVYSG-RG 149
Query: 532 IHCWVSDYEARTLDSPGRGAIADYL 606
H + D A LDS R I ++
Sbjct: 150 YHIRILDEWALQLDSKSRERILAFI 174
>UniRef50_A0B688 Cluster: DNA primase; n=1; Methanosaeta thermophila
PT|Rep: DNA primase - Methanosaeta thermophila (strain
DSM 6194 / PT) (Methanothrixthermophila (strain DSM 6194
/ PT))
Length = 395
Score = 40.7 bits (91), Expect = 0.037
Identities = 43/155 (27%), Positives = 65/155 (41%), Gaps = 5/155 (3%)
Frame = +1
Query: 157 SPQPLCNRELSFTLADDVYLR-YLSISHQKDLQTLLQKKCPHKLDVGAVYNTKPSVGR-H 330
+P + RE F D +R + S +K+L ++ P + A Y KP
Sbjct: 24 APPGMEAREWGFIFYDTPGMRRHRSFRSRKELVDYIRSTVPAHVYHSAAYYLKPDAPTMK 83
Query: 331 DAVVISRELVFDIDLTDYDEIR-TCCQEARVCEKCWKFMVIACEIIDKALKDDFGFQS-- 501
+ + +L+FD+D E R + ++ R E + ++++ L D FGF
Sbjct: 84 EKIWKGADLIFDLDADHLAEYRGSGIRDFR--EMLERVKGETMKLLEFLLSD-FGFDERM 140
Query: 502 ILWVFSGRRGIHCWVSDYEARTLDSPGRGAIADYL 606
I FSG RG H V D L S R I DYL
Sbjct: 141 ISVAFSGGRGYHIHVRDKSVLKLRSDARREIVDYL 175
>UniRef50_Q8PVZ4 Cluster: Probable DNA primase small subunit; n=4;
Methanosarcinaceae|Rep: Probable DNA primase small
subunit - Methanosarcina mazei (Methanosarcina frisia)
Length = 414
Score = 40.3 bits (90), Expect = 0.049
Identities = 47/157 (29%), Positives = 69/157 (43%), Gaps = 8/157 (5%)
Frame = +1
Query: 160 PQPLCNRELSFTLADDV----YLRYLSISHQKDLQTLLQKKCP-HKLDVGAVYNTKPSVG 324
P L NRE +F DD+ R+ S + L P H + A Y +
Sbjct: 25 PDHLPNREWAFIFYDDMPEKMMHRHKSFGSPGEALDYLYGMAPAHVYNSTAYYEYPDARK 84
Query: 325 RHDAVVISRELVFDIDLTDYDEIRTCCQE-ARVCEKCWKFMVIACEIIDKALKDDFGF-- 495
++ + EL+FD+D D + + A + E K + +++D L DDFGF
Sbjct: 85 MNEKNWLGAELIFDLDA---DHLPNAPRNYADMLELVKKETL---KLMDFLL-DDFGFSE 137
Query: 496 QSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIADYL 606
Q I VFSG RG H ++ + TL S R I +YL
Sbjct: 138 QDIELVFSGGRGYHFHITSPKVLTLGSSERREIVNYL 174
>UniRef50_Q8WTP4 Cluster: Phosphatidylinositol phosphate kinase 6;
n=3; Dictyostelium discoideum|Rep: Phosphatidylinositol
phosphate kinase 6 - Dictyostelium discoideum (Slime
mold)
Length = 1589
Score = 37.9 bits (84), Expect = 0.26
Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Frame = +1
Query: 43 LVKMIGEHNENILSDMLPTY--YARQFPQNIFCRWLACGSSPQPLCNRELSFTLADDVYL 216
L+K I H E+IL +LPTY + +++P ++ + L C + Q E+ F + ++++
Sbjct: 1339 LIKTIPTHEESILKAVLPTYVQHLQKYPNSLLIKILGC-YTLQIKGKAEMKFLVMNNLFF 1397
Query: 217 RYLSISHQKDLQ 252
L +S + DL+
Sbjct: 1398 TPLPLSEKYDLK 1409
>UniRef50_A7DQM5 Cluster: DNA primase, small subunit; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: DNA
primase, small subunit - Candidatus Nitrosopumilus
maritimus SCM1
Length = 373
Score = 37.1 bits (82), Expect = 0.45
Identities = 20/91 (21%), Positives = 39/91 (42%)
Frame = +1
Query: 160 PQPLCNRELSFTLADDVYLRYLSISHQKDLQTLLQKKCPHKLDVGAVYNTKPSVGRHDAV 339
P+ RE + + R++S+ K+L LL + P + Y + P++ ++
Sbjct: 27 PERTSEREFGYQKFNSGMTRHISVKDDKELHLLLMQNVPSDVYCSNAYYSFPNLPMNEKD 86
Query: 340 VISRELVFDIDLTDYDEIRTCCQEARVCEKC 432
+L+FDID D + +C +C
Sbjct: 87 WKEADLIFDIDAKDLNLSCRGNHTLSICNEC 117
>UniRef50_Q8F7A1 Cluster: Diaminopimelate decarboxylase; n=7;
cellular organisms|Rep: Diaminopimelate decarboxylase -
Leptospira interrogans
Length = 422
Score = 35.5 bits (78), Expect = 1.4
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +1
Query: 280 KLDVGAVYNTKPSV--GRHDAVVISRELVFDIDLTDYDEIRTCCQ 408
KLD G NT+PS+ +H VV+S+E V DY + CC+
Sbjct: 296 KLDAGMDVNTRPSLYAAKHPLVVVSKEGVHSGKTADYVYVGHCCE 340
>UniRef50_A2A9Q9 Cluster: Novel protein simlar to melanoma antigen,
family B, 5 Mageb5; n=5; Murinae|Rep: Novel protein
simlar to melanoma antigen, family B, 5 Mageb5 - Mus
musculus (Mouse)
Length = 366
Score = 34.7 bits (76), Expect = 2.4
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +1
Query: 139 WLACGSSPQPLCNRELSFTLADDVYLRYLSISHQKDLQTLLQKKCPHKLDV 291
WL+C SSP +C EL F D Y S + +T + C H LD+
Sbjct: 84 WLSCVSSPATVCGDELEFD--DGTYFHCGGNSLYSEYRTCQENPCKHCLDM 132
>UniRef50_Q93NW8 Cluster: AmphA; n=1; Streptomyces nodosus|Rep: AmphA
- Streptomyces nodosus
Length = 1412
Score = 34.7 bits (76), Expect = 2.4
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = +1
Query: 571 DSPGRGAIADYLCLIVGG--ENQSKKVHLGNENLHS-SIRRALNIIDKYFE 714
D PGR A+AD L +V N + + + +E++ S S+ R L+IID+ FE
Sbjct: 1360 DDPGRQAVADRLDALVASLRRNSAPQENFSDEDIESVSVDRLLDIIDEEFE 1410
>UniRef50_Q2JEV5 Cluster: 6-phosphogluconate dehydrogenase,
NAD-binding; n=6; Bacteria|Rep: 6-phosphogluconate
dehydrogenase, NAD-binding - Frankia sp. (strain CcI3)
Length = 302
Score = 34.3 bits (75), Expect = 3.2
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 541 WVSDYEARTLDSPGRGAI-ADYLCLIVGGENQSKKVHLGNENLHSSIRRALNIID 702
W ++ R SP A D +CL VG ++ ++V LG + + ++R I+D
Sbjct: 39 WAEEHSGRIAPSPAAAATEVDVVCLCVGADDDVREVVLGADGVLGALRPGAIIVD 93
>UniRef50_Q54SL5 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1331
Score = 33.5 bits (73), Expect = 5.6
Identities = 19/70 (27%), Positives = 39/70 (55%)
Frame = +1
Query: 475 LKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIADYLCLIVGGENQSKKVHLG 654
LK DF +QS +W ++G GI V + E+++ + G++ +I+ +N + ++
Sbjct: 660 LKVDFSYQSTIWPWTGHLGIFFTVPE-ESQSFNGVAEGSVE----VIIAIDNNNNN-NIN 713
Query: 655 NENLHSSIRR 684
N N+ S++ R
Sbjct: 714 NNNIKSTLSR 723
>UniRef50_UPI000023F01C Cluster: hypothetical protein FG06462.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG06462.1 - Gibberella zeae PH-1
Length = 1644
Score = 32.7 bits (71), Expect = 9.7
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +1
Query: 19 NVIIGVVVLVKMIGEHNENILSDMLPTYYARQFPQNIFCRWLACGSS 159
+++ GVV +++ G +E+I +M+P Y+ +NIF A GS+
Sbjct: 287 SIVTGVVAVIESWGLTSEDICLNMMPLYHVGGLVRNIFAPIFANGST 333
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 746,228,882
Number of Sequences: 1657284
Number of extensions: 15273568
Number of successful extensions: 37562
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 36179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37506
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60500186565
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -