Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2p17
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi...   183   3e-47
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    29   0.70 
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.8  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    27   2.8  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    26   4.9  
SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schi...    26   6.5  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   8.6  

>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score =  183 bits (445), Expect = 3e-47
 Identities = 89/225 (39%), Positives = 134/225 (59%), Gaps = 7/225 (3%)
 Frame = +1

Query: 82  SDMLPTYYARQFPQNIFCRWLACGSS-PQPLCNRELSFTLADDVYLRYLSISHQKDLQTL 258
           S+ +  YY   FP     +WL  G        +RE +FTL +D Y+RYLS S+ ++L+  
Sbjct: 32  SETMIQYYRHLFPWKYLFQWLNHGPVVTNDFAHREFAFTLPNDAYIRYLSFSNWEELKKE 91

Query: 259 LQKKCPHKLDVGAVYNTKP----SVGRHDAVVISRELVFDIDLTDYDEIRTCCQEARVCE 426
               CP + +VG VY+  P    ++ +     + +ELVFDID+TDYD++RTCC +  +CE
Sbjct: 92  ALNLCPSRFEVGPVYSANPRDRKTIRKSTFHPLKKELVFDIDMTDYDDVRTCCSKTNICE 151

Query: 427 KCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIADYL 606
           KCW F+ IA +++D    +DFGF+ ILWV+SGRRGIH W+ D  A +LD   R  IA YL
Sbjct: 152 KCWPFITIAVQVLDICFHEDFGFKHILWVYSGRRGIHAWICDEIACSLDDRSRRMIASYL 211

Query: 607 CLIVGG-ENQSKKVHLGNENLHSSIRRALNIIDKYFEQL-LXDQE 735
            ++VG  +   + ++     LH  + R+LNI+   F ++ L DQ+
Sbjct: 212 QVVVGNPQGGVRLINNLKRPLHPHLTRSLNILKSAFVKIVLEDQD 256


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 418 VCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSG 522
           +C  C K   I   ++   L +  GF ++LW+F G
Sbjct: 497 ICAACGKAGAILSALLFNKLTEVIGFGNVLWIFFG 531


>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -3

Query: 707 YLSIIFKARLILECKF--SLPRCTFLLWFSP 621
           Y SI   + +   C +  ++P C  LLWF P
Sbjct: 335 YFSIYKMSDMAASCTYMAAMPACVILLWFEP 365


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = -2

Query: 495 EPEVIF*SFINDFTCNNHKFPAFFTH 418
           +P+V + + ++DF+C+ + FP   +H
Sbjct: 563 DPKVEYKAILHDFSCHTYDFPESLSH 588


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 460 IIDKALKDDFGFQSIL-WVFSGRRGIHCWVSDYEARTLDSPGRGAIADY 603
           I+DK ++  FGF S+L   FS  R        +EA   DS G G +A Y
Sbjct: 399 ILDKPVESVFGFISVLPGAFSAYR--------FEALQNDSQGNGPLASY 439


>SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase
           Gsk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 10  PKKNVIIGVVVLVKMIGEHNENILSDMLPTYYARQFPQ 123
           P ++ I  +V ++K++G  +   +  M P Y   +FPQ
Sbjct: 234 PGESGIDQLVEIIKILGTPSREQIKTMNPNYMEHRFPQ 271


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +1

Query: 142 LACGSSPQPLCNRELSFTLADDV--YLRYLSI-SHQKDLQTLLQKKCPHKLDVGAVYNT 309
           LA  S   PL   EL   L+  V  Y + L + +++  L  +L+KK  + +    +Y T
Sbjct: 712 LAALSDASPLVRHELVIFLSHFVVNYKKQLMVVAYESSLADILEKKNHNSISASTIYET 770


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,213,975
Number of Sequences: 5004
Number of extensions: 69174
Number of successful extensions: 183
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)