Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2p17
         (742 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0678 - 16871481-16871620,16871836-16871881,16872170-168722...    73   3e-13
11_04_0339 - 16527602-16527742,16528622-16528800,16529617-165296...    29   3.9  
08_02_1426 + 27009720-27010787,27011846-27012517,27012999-270137...    28   6.8  

>05_03_0678 -
           16871481-16871620,16871836-16871881,16872170-16872243,
           16872495-16872552,16872640-16872702,16872891-16873012,
           16873132-16873247,16873367-16873428,16873497-16873589,
           16874061-16874138,16874248-16874423,16874500-16874550,
           16874964-16875078
          Length = 397

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 39/110 (35%), Positives = 63/110 (57%), Gaps = 14/110 (12%)
 Frame = +1

Query: 82  SDMLPTYYARQFPQNIFCRWLACGSSPQ-PLCN------RELSFTLADDVYLRYLSISHQ 240
           +D L  YY + FP   F +WL+ G+  + P C+      RE SFTL +D+Y+R+ S    
Sbjct: 31  ADYLRIYYGKLFPHVDFFKWLSYGNDGKHPGCDQSYVGRREFSFTLENDIYVRFQSFDSV 90

Query: 241 KDLQTLLQKKCPHKLDVGAVYNTKPS-------VGRHDAVVISRELVFDI 369
            +++  +++KCP K+D+G VY+  P+        G +  V + REL+FDI
Sbjct: 91  AEMENSIKEKCPFKIDIGPVYSVDPAKRHAYAQSGNNVFVPVERELIFDI 140



 Score = 36.3 bits (80), Expect = 0.026
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
 Frame = +1

Query: 568 LDSPGRGAIADYLCLI-VGGENQSKKVHLGNENLHSSIRRA-LNIIDKYFE-QLLXDQE 735
           L++  R AIADY  +  VGGEN  KKV L    LH  + R+  +++  +FE +LL  Q+
Sbjct: 154 LNNEQRAAIADYFRVYKVGGENTMKKVSLTGAVLHPFLARSYTDVLKGFFEDKLLLSQQ 212


>11_04_0339 -
           16527602-16527742,16528622-16528800,16529617-16529680,
           16530357-16530475,16530560-16530686,16530937-16531149,
           16531462-16531500
          Length = 293

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -3

Query: 533 IPRRPENTHRMLWNPKSSFKALSMISHAITINFQHFSHT 417
           I +R +   R++W  K    ALS ISHA  IN   F+ T
Sbjct: 71  ISKRKDEYVRIMW--KQEINALSSISHANVINLVGFADT 107


>08_02_1426 +
           27009720-27010787,27011846-27012517,27012999-27013793,
           27014914-27014943,27018095-27019987
          Length = 1485

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = +1

Query: 145 ACGSSPQPLCNRELSFTLADDVYLRYLSISHQK-DLQTLLQKKCPHKLDVGAVYNTKPSV 321
           A  S P PL   EL  T  DD+    ++   +K DL  L+ K      ++ AV+ T  + 
Sbjct: 139 AAASEPSPLTAAELQSTTFDDIEATRVAKQQEKVDLVDLITKDGDGLQEI-AVWGTSGAT 197

Query: 322 GRHDAVVISRELVFD 366
           G    V ++ + V D
Sbjct: 198 GVASVVWVAYQKVKD 212


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,471,409
Number of Sequences: 37544
Number of extensions: 404233
Number of successful extensions: 923
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)