Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2p17
         (742 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22179-4|CAA80161.1|  410|Caenorhabditis elegans Hypothetical pr...   191   5e-49
AF100306-5|AAC68924.2|  318|Caenorhabditis elegans Hypothetical ...   189   2e-48
U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily ass...    29   3.5  
U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily ass...    29   3.5  

>Z22179-4|CAA80161.1|  410|Caenorhabditis elegans Hypothetical
           protein F58A4.4 protein.
          Length = 410

 Score =  191 bits (465), Expect = 5e-49
 Identities = 103/232 (44%), Positives = 139/232 (59%), Gaps = 6/232 (2%)
 Frame = +1

Query: 64  HNENILSDMLPTYYARQFPQNIFCRWLACGSSPQPLCNR-ELSFTLADDVYLRYLSISHQ 240
           +N   L   LP YY   FP   F +WL  G +     NR E +F LADDV++RY S + +
Sbjct: 3   YNSIRLPQDLPIYYKNFFPVKPFTKWLRYGQNNGDYFNRREFAFILADDVHIRYRSYNDE 62

Query: 241 KDLQTLLQKKCPHKLDVGAVYNTKP-SVGRH-DAVVISRELVFDIDLTDYDEIRTCCQEA 414
                 L    P KLD+GAVYN +P +  RH D   + RELVFDIDLTDYD +R CC++A
Sbjct: 63  HAFFKALSSTNPEKLDIGAVYNHEPINNKRHTDYQAVERELVFDIDLTDYDPVRNCCKDA 122

Query: 415 RVCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAI 594
            VC KCWKFMV+A +I+D  L+D F F++ +WVFSGRRG+HCWV D +AR L++  R AI
Sbjct: 123 TVCPKCWKFMVLAVKILDFQLEDMFDFKARMWVFSGRRGVHCWVGDKKARMLNNYQRSAI 182

Query: 595 ADYLCLI-VGGENQSKKVHLGNENLHSSIRRALNII--DKYFEQLLXDQEFL 741
           A  L L    G+ +  +       +   +R A N+   D  FE+++ DQ +L
Sbjct: 183 ATRLNLFKKNGQCEVTEGRAKMTKVPPIVRDAFNVALKDGVFEKMIYDQGWL 234


>AF100306-5|AAC68924.2|  318|Caenorhabditis elegans Hypothetical
           protein T24C4.5 protein.
          Length = 318

 Score =  189 bits (460), Expect = 2e-48
 Identities = 99/232 (42%), Positives = 137/232 (59%), Gaps = 6/232 (2%)
 Frame = +1

Query: 64  HNENILSDMLPTYYARQFPQNIFCRWLACGSSPQPLCNR-ELSFTLADDVYLRYLSISHQ 240
           +N   L   LP YY   FP   F +WL  G +     NR E +F LADDV++RY S + +
Sbjct: 3   YNSIRLPQDLPIYYKNFFPVKPFTKWLCYGQNYGDYFNRREFTFILADDVHIRYRSYNDE 62

Query: 241 KDLQTLLQKKCPHKLDVGAVYNTKPSVGRH--DAVVISRELVFDIDLTDYDEIRTCCQEA 414
                 L    P KLD+GAVYN +P   +   D   + RELVFDIDLTDYD +R CC++A
Sbjct: 63  HSFVKALSSTNPEKLDIGAVYNHEPINNKRYTDYQAVERELVFDIDLTDYDPVRNCCKDA 122

Query: 415 RVCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAI 594
            VC KCWKFMV+A  I+D  L++ F F++ +WVFSGRRG+HCWV D +AR L++  R AI
Sbjct: 123 TVCPKCWKFMVLAVRILDFQLEEMFNFKARMWVFSGRRGVHCWVGDKKARMLNNNQRSAI 182

Query: 595 ADYLCLI-VGGENQSKKVHLGNENLHSSIRRALNII--DKYFEQLLXDQEFL 741
           A  L L    G+ +  +       +  ++R A N+   D  FE+++ +Q +L
Sbjct: 183 ATRLNLFKKNGQCEVTEGRAKLTRVPPTVRDAFNVALKDGVFEKMIYEQGWL 234


>U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform b protein.
          Length = 408

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -3

Query: 83  DRMFSLCSPIIFTKTTTPIMTF-FLGIS 3
           DR FS+ SP+ +  T TP+  F ++G+S
Sbjct: 119 DRYFSVTSPLTYPATRTPLRMFIYIGVS 146


>U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform a protein.
          Length = 406

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -3

Query: 83  DRMFSLCSPIIFTKTTTPIMTF-FLGIS 3
           DR FS+ SP+ +  T TP+  F ++G+S
Sbjct: 119 DRYFSVTSPLTYPATRTPLRMFIYIGVS 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,639,078
Number of Sequences: 27780
Number of extensions: 384595
Number of successful extensions: 1011
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)