Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2p16
         (736 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1D2F5 Cluster: Putative lipoprotein; n=1; Myxococcus x...    38   0.19 
UniRef50_A5UYJ2 Cluster: tRNA delta(2)-isopentenylpyrophosphate ...    33   5.5  
UniRef50_Q1FGK4 Cluster: Putative O-antigen export protein; n=1;...    33   7.3  

>UniRef50_Q1D2F5 Cluster: Putative lipoprotein; n=1; Myxococcus
           xanthus DK 1622|Rep: Putative lipoprotein - Myxococcus
           xanthus (strain DK 1622)
          Length = 558

 Score = 38.3 bits (85), Expect = 0.19
 Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = +2

Query: 461 LVLPALSAEDVSYQACVDKYSRKGYQPWQEWSDHY-TCHRY-RCEIRDGKYFIAAVG*DC 634
           +V PAL+A      +CV+ Y   G   W  WS+ + TC  Y   E+ DG +  A    DC
Sbjct: 72  VVSPALAAS----LSCVETYVNAGTCDWAHWSEMWETCETYEHPELEDGVFLEAVQVEDC 127

Query: 635 RVVLWVLDRQFLL 673
            V  W   R  LL
Sbjct: 128 TVANWSTLRAQLL 140


>UniRef50_A5UYJ2 Cluster: tRNA delta(2)-isopentenylpyrophosphate
           transferase; n=5; Chloroflexi (class)|Rep: tRNA
           delta(2)-isopentenylpyrophosphate transferase -
           Roseiflexus sp. RS-1
          Length = 305

 Score = 33.5 bits (73), Expect = 5.5
 Identities = 20/57 (35%), Positives = 30/57 (52%)
 Frame = -1

Query: 670 EKLAVQHPQHDPTISPDSSYEVFPVSDLASVAVARVVIRPLLPRLVTFPGVFIDAGL 500
           E+ AV H   D  + PD ++ +    DLA+ A+A +  R  LP LV   G ++ A L
Sbjct: 53  ERAAVPHHLID-IVDPDEAFSLAVYQDLATAAIADIAARGRLPFLVGGTGQYLAAVL 108


>UniRef50_Q1FGK4 Cluster: Putative O-antigen export protein; n=1;
           Clostridium phytofermentans ISDg|Rep: Putative O-antigen
           export protein - Clostridium phytofermentans ISDg
          Length = 451

 Score = 33.1 bits (72), Expect = 7.3
 Identities = 19/64 (29%), Positives = 34/64 (53%)
 Frame = +3

Query: 243 LVLLSRFLSCYLLVIRQSNVFYIFIHTNF*NRCYLMRVSYEINNYYSFFF*RWLAS*EYN 422
           ++ +++ L   +L+I   N+F + I  N  N    +  +++IN  Y FFF  + +   YN
Sbjct: 317 IINVNKILKIIVLIITIGNLFLLIISQNIIN--LWINNNFKINYIYGFFFVLYASITIYN 374

Query: 423 TGSS 434
           T SS
Sbjct: 375 TASS 378


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 653,775,435
Number of Sequences: 1657284
Number of extensions: 12254649
Number of successful extensions: 26862
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26858
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59677054775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)