Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2p16
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    27   2.1  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    27   2.1  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    27   3.7  
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    26   6.4  

>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 539 PWQEWSDHYTCHRYRCEIRDG 601
           P+Q+W D+Y C  Y   +R G
Sbjct: 478 PYQKWVDNYFCEDYLSAVRRG 498


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -1

Query: 337 RFQKFVWIKI*NTLLCL--ITKR*QDRNRLNRTNVAES*WRHTNYQHGSL 194
           RF KFV   I  TLL L     + QD  R+N+     +    TN +HGSL
Sbjct: 653 RFYKFVESSIKPTLLVLKPFPLKPQDGQRVNKQQSVNAGNVRTNNKHGSL 702


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 655 QHPQHDPTISPDSSYEVFPVSDLASV 578
           +H   +P +SPD+S    PV+D+  +
Sbjct: 514 RHGPREPCLSPDASSSSIPVTDIKEI 539


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 596 DGKYFIAAVG*DCRVVLWVLDRQFLLLFSRVNEVRST 706
           D +YF++    DC++ LW + R  +L ++ +  V ST
Sbjct: 307 DDRYFVSG-SLDCKIQLWSILRHKILHWTELEYVVST 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,749,212
Number of Sequences: 5004
Number of extensions: 52486
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)