Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2p16
         (736 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023835-9|CAA19493.2|  397|Caenorhabditis elegans Hypothetical ...    31   1.1  
U70849-1|AAF99923.1|  381|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AF348166-1|AAK37544.1| 1221|Caenorhabditis elegans Toll-like rec...    28   7.9  
AC006604-2|AAF39752.2| 1221|Caenorhabditis elegans Toll (drosoph...    28   7.9  

>AL023835-9|CAA19493.2|  397|Caenorhabditis elegans Hypothetical
           protein Y37A1B.10 protein.
          Length = 397

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +1

Query: 4   HLVTVSRNLYFTNIVLKMLLAFINYSKNTIFHFFCFYLNATVQGFNHN 147
           HL+T++R     N V  +++   +    T+FH    Y++  +  + HN
Sbjct: 53  HLITITRKSLRANSVYVLMIGITSSDLYTMFHINYVYIDTIISTYLHN 100


>U70849-1|AAF99923.1|  381|Caenorhabditis elegans Hypothetical
           protein F29B9.8 protein.
          Length = 381

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
 Frame = +1

Query: 298 TYFIFLSIQIFEIVAT**G-FLMKSIII---ILFFF--KDGWRPENTTREAVGSVVY 450
           TY ++   Q+F IV+   G F+  S++     +FFF  K   RPE  T E +GSV +
Sbjct: 159 TYQVYTKDQLFSIVSYVAGDFIFWSLLFSTYTVFFFAHKAIARPEQITYEPIGSVFF 215


>AF348166-1|AAK37544.1| 1221|Caenorhabditis elegans Toll-like
           receptor TOL-1 protein.
          Length = 1221

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -1

Query: 712 CLCAPDFVHPTKQ*EKLAVQHPQHDPTISPDSSYEVFPVSDLASVAVA 569
           C CAPD V PT   + L   +   + TI+P +S     V+++ S+ ++
Sbjct: 32  CKCAPDPVQPTS--KLLLCDYSSKNTTITPIASSNYDQVANIRSLFIS 77


>AC006604-2|AAF39752.2| 1221|Caenorhabditis elegans Toll
           (drosophila) family protein 1 protein.
          Length = 1221

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -1

Query: 712 CLCAPDFVHPTKQ*EKLAVQHPQHDPTISPDSSYEVFPVSDLASVAVA 569
           C CAPD V PT   + L   +   + TI+P +S     V+++ S+ ++
Sbjct: 32  CKCAPDPVQPTS--KLLLCDYSSKNTTITPIASSNYDQVANIRSLFIS 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,115,576
Number of Sequences: 27780
Number of extensions: 290436
Number of successful extensions: 643
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)