Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2p14
         (744 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81050-10|CAB02860.1|  329|Caenorhabditis elegans Hypothetical p...    31   0.86 
Z68118-1|CAA92186.2| 1014|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF235027-1|AAF68380.1| 1017|Caenorhabditis elegans guanylyl cycl...    29   2.6  
Z46241-4|CAA86318.1|  837|Caenorhabditis elegans Hypothetical pr...    28   6.1  
U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p...    28   6.1  
U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated p...    28   6.1  
M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related...    28   6.1  

>Z81050-10|CAB02860.1|  329|Caenorhabditis elegans Hypothetical
           protein C50B6.12 protein.
          Length = 329

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = +1

Query: 184 IHNINCFTKYFKKYYIIGIFAYFATI---IYHGMYIPLQNIIRLIF 312
           IHN N    YF    +   F YF TI   IY GMY  L  II + F
Sbjct: 63  IHNFNGSLTYFSHTILSEDFLYFWTIFIDIYGGMYCSLITIIAVQF 108


>Z68118-1|CAA92186.2| 1014|Caenorhabditis elegans Hypothetical
           protein R01E6.1 protein.
          Length = 1014

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = +1

Query: 478 LVLSPGSMKEKKMISNENILANLLRVKRSISYETIMFANDMREQFKTMIKSMD 636
           L++ P S +   ++  +    N L +KRS   + I F ND+ +QF T+IK  D
Sbjct: 816 LIMPPRSYESATVMFVQICDFNAL-MKRSSPEQVIAFLNDIYDQFDTVIKRHD 867


>AF235027-1|AAF68380.1| 1017|Caenorhabditis elegans guanylyl cyclase
           protein.
          Length = 1017

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = +1

Query: 478 LVLSPGSMKEKKMISNENILANLLRVKRSISYETIMFANDMREQFKTMIKSMD 636
           L++ P S +   ++  +    N L +KRS   + I F ND+ +QF T+IK  D
Sbjct: 819 LIMPPRSYESATVMFVQICDFNAL-MKRSSPEQVIAFLNDIYDQFDTVIKRHD 870


>Z46241-4|CAA86318.1|  837|Caenorhabditis elegans Hypothetical
           protein C38D4.5 protein.
          Length = 837

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = -3

Query: 502 SSTPERAPKVRSFCIFQPDLPCTKAKLLPRKLRPIRTERTQQLYSSFRHDSARLVFRPRK 323
           S+TP+R   +     F P   C + +       P+RT R   L  S   + A  V +P+K
Sbjct: 351 SNTPDRPILMEDSADFTPSSRCEERRGSGDGREPVRTIRCGDLERSENDEPAEKVVKPKK 410


>U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated
            protein 104, isoforma protein.
          Length = 1584

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +1

Query: 466  RSEPLVLSPGSMKEKKMISNENILANLLRVKRSISYETIMFAN 594
            RS  L+    S  ++ + SN++I+ NL  +KRS+S   I+  N
Sbjct: 1404 RSSDLLCRQKSKSDQNLASNDDIVDNLGGMKRSLSGSRILQLN 1446


>U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated
            protein 104, isoformb protein.
          Length = 1628

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +1

Query: 466  RSEPLVLSPGSMKEKKMISNENILANLLRVKRSISYETIMFAN 594
            RS  L+    S  ++ + SN++I+ NL  +KRS+S   I+  N
Sbjct: 1448 RSSDLLCRQKSKSDQNLASNDDIVDNLGGMKRSLSGSRILQLN 1490


>M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related
            protein protein.
          Length = 1584

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +1

Query: 466  RSEPLVLSPGSMKEKKMISNENILANLLRVKRSISYETIMFAN 594
            RS  L+    S  ++ + SN++I+ NL  +KRS+S   I+  N
Sbjct: 1404 RSSDLLCRQKSKSDQNLASNDDIVDNLGGMKRSLSGSRILQLN 1446


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,018,454
Number of Sequences: 27780
Number of extensions: 330981
Number of successful extensions: 725
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)