Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2p14
         (744 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14990.2 68416.m01896 4-methyl-5(b-hydroxyethyl)-thiazole mon...    29   2.5  
At3g14990.1 68416.m01895 4-methyl-5(b-hydroxyethyl)-thiazole mon...    29   2.5  
At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein ...    27   9.9  
At3g19600.1 68416.m02485 NLI interacting factor (NIF) family pro...    27   9.9  

>At3g14990.2 68416.m01896 4-methyl-5(b-hydroxyethyl)-thiazole
           monophosphate biosynthesis protein, putative supporting
           cDNA gi|11908017|gb|AF326856.1|; contains Pfam profile
           PF01965:DJ-1/PfpI family; identical to cDNA  EST Athsr7
           GI:5281061
          Length = 369

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 22/80 (27%), Positives = 38/80 (47%)
 Frame = +1

Query: 313 SKNIYEVEKLILLSRVEKNYIIAGFSLFLLVVTFAVKALLSYTASLAEICRRSEPLVLSP 492
           S+ I  +  + +L R + N +IA     L  V  + KA L     L E+  +S  L++ P
Sbjct: 199 SEEIEAIALVDILRRAKANVVIAAVGNSL-EVEGSRKAKLVAEVLLDEVAEKSFDLIVLP 257

Query: 493 GSMKEKKMISNENILANLLR 552
           G +   +  ++   L N+LR
Sbjct: 258 GGLNGAQRFASCEKLVNMLR 277


>At3g14990.1 68416.m01895 4-methyl-5(b-hydroxyethyl)-thiazole
           monophosphate biosynthesis protein, putative supporting
           cDNA gi|11908017|gb|AF326856.1|; contains Pfam profile
           PF01965:DJ-1/PfpI family; identical to cDNA  EST Athsr7
           GI:5281061
          Length = 392

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 22/80 (27%), Positives = 38/80 (47%)
 Frame = +1

Query: 313 SKNIYEVEKLILLSRVEKNYIIAGFSLFLLVVTFAVKALLSYTASLAEICRRSEPLVLSP 492
           S+ I  +  + +L R + N +IA     L  V  + KA L     L E+  +S  L++ P
Sbjct: 222 SEEIEAIALVDILRRAKANVVIAAVGNSL-EVEGSRKAKLVAEVLLDEVAEKSFDLIVLP 280

Query: 493 GSMKEKKMISNENILANLLR 552
           G +   +  ++   L N+LR
Sbjct: 281 GGLNGAQRFASCEKLVNMLR 300


>At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 1230

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 324 NVFRKYQ-PYDVLKRNVHAMVDDSSKISENS 235
           NV +KY  P    + NVHA  DD SK+  NS
Sbjct: 611 NVQKKYDAPILRSRNNVHADKDDCSKVHNNS 641


>At3g19600.1 68416.m02485 NLI interacting factor (NIF) family
           protein low similarity to CTD phosphatase [Xenopus
           laevis] GI:13487713; contains Pfam profile PF03031: NLI
           interacting factor
          Length = 601

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = +1

Query: 466 RSEPLVLSPGSMKEKKMISNENILANLLRVKRSISYETIMFANDMREQFKTMIKSMDTPQ 645
           RS+  VL P S ++     N   LAN+L++ + I ++      ++  Q   +  S+    
Sbjct: 242 RSQSRVLKPHSEEKTDESENNGGLANVLKLLKGIHHKFFKVEEEVESQDVRLTMSVVENF 301

Query: 646 SQEP 657
           S EP
Sbjct: 302 SSEP 305


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,781,257
Number of Sequences: 28952
Number of extensions: 295454
Number of successful extensions: 712
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)