Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2p12
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi...   262   3e-71
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo...    85   7e-18
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ...    57   3e-09
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S...    55   9e-09
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo...    53   5e-08
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz...    40   5e-04
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    31   0.21 
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce...    29   0.50 
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    29   0.87 
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc...    27   2.6  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.6  
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch...    26   6.1  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    26   6.1  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    26   6.1  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    26   6.1  

>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
           Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 448

 Score =  262 bits (643), Expect = 3e-71
 Identities = 119/168 (70%), Positives = 152/168 (90%), Gaps = 1/168 (0%)
 Frame = +3

Query: 210 YEPPIPTRVGKKKRKAK-GPDAALKLPQVTPHTRCRLKLLKLERIKDYLLMEEEFIRNQE 386
           YEPP+PTR G++K+KA+ GPDA+ KLP V P TRCRL+LLK++RI D+LLMEEE+++NQE
Sbjct: 31  YEPPVPTRTGRRKKKAQSGPDASAKLPTVIPTTRCRLRLLKMQRIHDHLLMEEEYVQNQE 90

Query: 387 RLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQ 566
           RLKPQ+E+ +EER++VD++RGTPMSVG LEEIIDD+HAIVST+ G E+YVSI+SFVDKD 
Sbjct: 91  RLKPQDERTQEERNRVDEIRGTPMSVGTLEEIIDDDHAIVSTA-GPEYYVSIMSFVDKDM 149

Query: 567 LEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKAPQETYADIGGLD 710
           LEPGCSVLL+HK  ++VG+L DDTDPM++VMKL+KAP E+YADIGGL+
Sbjct: 150 LEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTESYADIGGLE 197


>SPCC576.10c |rpt3||19S proteasome regulatory subunit
           Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 389

 Score = 85.4 bits (202), Expect = 7e-18
 Identities = 44/127 (34%), Positives = 76/127 (59%)
 Frame = +3

Query: 330 LERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVS 509
           LER  + L ++E FI+  E  K  + ++   + +V  ++  P+ +G   E ID N AIV 
Sbjct: 16  LERQLEMLDLQEGFIK--EDCKSLKRELIRAQEEVKRIQSVPLVIGQFLEAIDQNTAIVG 73

Query: 510 TSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKAPQETY 689
           ++ GS + V ILS +D++ L+P  SV L    +A+V +L  + D  +S+++ ++ P  +Y
Sbjct: 74  STTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDERPDVSY 133

Query: 690 ADIGGLD 710
           AD+GGLD
Sbjct: 134 ADVGGLD 140


>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
           Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 21/142 (14%)
 Frame = +3

Query: 345 DYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIID------------ 488
           D  +M+ EF R         EKI+E + K+ + +  P  VGN+ EI+D            
Sbjct: 49  DIKVMKSEFQRLTHEKSTMLEKIKENQEKISNNKMLPYLVGNVVEILDMQPDEVDVQESA 108

Query: 489 ---------DNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTD 641
                       A++ TS     ++ ++  V+ ++L PG  + +N   + ++  L  + D
Sbjct: 109 NQNSEATRVGKSAVIKTSTRQTIFLPLIGLVEPEELHPGDLIGVNKDSYLIIDKLPSEYD 168

Query: 642 PMVSVMKLEKAPQETYADIGGL 707
             V  M++++ P E Y+DIGGL
Sbjct: 169 SRVKAMEVDEKPTERYSDIGGL 190


>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
           Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 55.2 bits (127), Expect = 9e-09
 Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 4/130 (3%)
 Frame = +3

Query: 333 ERIKDYLLMEEEFIRNQERLKPQEEKIEEE----RSKVDDLRGTPMSVGNLEEIIDDNHA 500
           ++I+D  L   +  +N  RL+ Q   +       R ++  L+     VG + + +  N  
Sbjct: 22  QKIQDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQLLQEPGSYVGEVIKTMGKNKV 81

Query: 501 IVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKAPQ 680
           +V      ++ V I   +D  +++P   V L +  + ++ +L +  DP+VS+M +EK P 
Sbjct: 82  LVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEKIPD 141

Query: 681 ETYADIGGLD 710
            TY  +GGL+
Sbjct: 142 STYEMVGGLE 151


>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
           Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 388

 Score = 52.8 bits (121), Expect = 5e-08
 Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 4/131 (3%)
 Frame = +3

Query: 330 LERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDD----LRGTPMSVGNLEEIIDDNH 497
           LE+ K YLL   E+    + L+     + ++  K +D    L+     +G + + +D   
Sbjct: 8   LEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQLDSER 67

Query: 498 AIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKAP 677
            IV  S G  + V   + VD+  L  G  V L+     ++ +L  + DP+V  M +E   
Sbjct: 68  FIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMSIEDPG 127

Query: 678 QETYADIGGLD 710
             ++A +GGL+
Sbjct: 128 DISFAGVGGLN 138


>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
           Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 21/77 (27%), Positives = 39/77 (50%)
 Frame = +3

Query: 474 EEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVS 653
           E+  + N  +++    ++  VS+   V    +E G  V  +   +A+   L    DP V+
Sbjct: 107 EQSAEKNAYVINLKQIAKFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVT 166

Query: 654 VMKLEKAPQETYADIGG 704
           +M++E+ P  TY D+GG
Sbjct: 167 MMQVEEKPDVTYGDVGG 183


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 20/60 (33%), Positives = 32/60 (53%)
 Frame = +3

Query: 312 RLKLLKLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDD 491
           R KLLKLE     L+ ++E + + E  K  +   E+ R   + LR + +   NL E+ID+
Sbjct: 664 RTKLLKLEESNKSLIKKQEDVDSLE--KNIQTLKEDLRKSEEALRFSKLEAKNLREVIDN 721


>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +3

Query: 297 PHTRCRLKLLKLERIKDYLLM 359
           PHT  RLK  K  +IKDYL M
Sbjct: 55  PHTAIRLKERKANKIKDYLTM 75


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 219 PIPTRVGKKKRKAKGPDAALK 281
           PIP+R G++KRK +GP   +K
Sbjct: 208 PIPSRRGRRKRKMRGPILPVK 228


>SPAC6B12.05c |||chromatin remodeling complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 295

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 360 EEEFIRNQERLKPQEEKIEEERSKVDDLRGTPM 458
           EE+ I ++E  +  EE++EEE  + +D    P+
Sbjct: 65  EEDIIDDEESAQVDEEELEEEEEEEEDATPEPV 97


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +3

Query: 381  QERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVG-SEHYVSILSFVD 557
            Q+R K  EE +  E+ ++  L+    S  + EE+  +   +    V  S+HY  +L ++ 
Sbjct: 1749 QKRRKELEEFMSSEQERIGFLKSQLESNNDSEEVRQEYEELTKRIVTLSDHY-RLLEYLL 1807

Query: 558  KDQLEPGCS 584
            KD  E  CS
Sbjct: 1808 KD--ESSCS 1814


>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 245

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +2

Query: 227 YTSW*KEKES*GTRCGSQASASHASYKMSTQVVKTRKNKRLFVDGRGVHP*SRTLEA-TG 403
           Y +  +EK+     C S      A +++  Q    +KNK    D   +H  SR LE+  G
Sbjct: 151 YLTLSREKQDQAIACVSDTVIPEAKWRIRVQTRFLKKNKSSLFDNPTIH--SRQLESMAG 208

Query: 404 RE 409
           R+
Sbjct: 209 RK 210


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = +3

Query: 327 KLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLR---GTPMSVGNLEEIIDDNH 497
           KL  + D   MEEEF+   + +  + EK     SK   L+    + +  G L+E++ +N 
Sbjct: 166 KLSGLDDSSFMEEEFVWQVDNVLQECEKKFTPHSKGSYLKENLKSELRKGRLDELMCENT 225

Query: 498 AI 503
           A+
Sbjct: 226 AL 227


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = +3

Query: 282 LPQVTPHTRCRLKLLKLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMS 461
           L  VT   +  LK +   ++ DY    E++ +  + +K  E   E E S     +G P S
Sbjct: 408 LSTVTYDNKDSLKNMN-SKLVDYFQWREQYRKMSKSIKKPEPSKEREASNTTSRKGVPPS 466


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 318  KLLKLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKV 434
            K+L+ +R+     M  E IRN    K Q+E I ++ +++
Sbjct: 1190 KILRYQRLTKEYEMRAEQIRNDYAAKCQDEPIPDDEARL 1228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,583,772
Number of Sequences: 5004
Number of extensions: 47810
Number of successful extensions: 156
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)