Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2p12
         (712 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    26   1.0  
AB090814-1|BAC57903.1|  499|Anopheles gambiae gag-like protein p...    25   2.3  

>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 21/83 (25%), Positives = 37/83 (44%)
 Frame = +3

Query: 357  MEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYV 536
            + EE   ++  L   ++ IEEE++K+D +R T        +   D    V   +      
Sbjct: 784  LREELEHSRTILAKLQKGIEEEQAKLDQVRRTVQQEEQTAQAKKDAMGAVEAEI-----A 838

Query: 537  SILSFVDKDQLEPGCSVLLNHKV 605
             I + +DK+Q +    +  NHKV
Sbjct: 839  RIQASIDKEQ-QARHDLQTNHKV 860


>AB090814-1|BAC57903.1|  499|Anopheles gambiae gag-like protein
           protein.
          Length = 499

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 213 EPPIPTRVGKKKRKAKGPDAA 275
           EPP     GK+ RKA+ P+ A
Sbjct: 175 EPPETPMTGKRSRKARTPEEA 195


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 644,437
Number of Sequences: 2352
Number of extensions: 11283
Number of successful extensions: 284
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 72758970
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)