Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2p11
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar...    28   1.2  
SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr 3||...    27   2.9  
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    27   2.9  
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     27   2.9  
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch...    27   3.8  
SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe...    27   3.8  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    25   8.8  

>SPAC9G1.05 |||actin cortical patch component Aip1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 595

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 711 LYPAKQRILARRIDRQRPCFQ 649
           +YPA + I+ R I++Q  CFQ
Sbjct: 33  VYPANKAIIIREIEKQENCFQ 53


>SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 265

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +3

Query: 393 YVEYNITSSPPKMIGIAFNGRRICGPSFVLSLLHSDYRY 509
           ++EY   +  P+ + ++FNG + C   F+L + +   +Y
Sbjct: 37  FIEYAFETYQPERLAMSFNGGKDCLVLFLLCIYYLKEKY 75


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 276 YSEAFKNCLGSVTQENKYEFMINRTDFVINPGEVKKVQIYV 398
           Y E+ K C   +   + YE  +  T FV  P E+   ++Y+
Sbjct: 447 YCESVKACQEHLLAGDSYEMCLTDTTFVSAPPELSDFEMYM 487


>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 160 VSSNTTQAYSIQVDGTALSSYQATTLS 240
           V+ N  Q+YS  +DGTAL S  A  ++
Sbjct: 156 VNGNVNQSYSKGIDGTALPSTHANPVA 182


>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 237 IHSLWLNIHLDDNYSEAFKNCLGSVTQENKYEFMI 341
           IH LW + ++ + +S    +C      EN ++F++
Sbjct: 68  IHQLWKDENIPERWSNTVNSCRRQHPDENGWQFIL 102


>SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 229

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -1

Query: 671 IVNVLVFSLVCWIRNYAAVGSALYIVCWVTGSFLLRGWWQSAWS-IRTSP 525
           + N+  F  + ++  Y    +A+ +V W+  + LL    +S W  +R  P
Sbjct: 124 VSNLFAFISIQFLNRYLPNTTAVKVVSWILQALLLFNLLESVWQFVRPQP 173


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -1

Query: 626 YAAVGSALYIVCWVTGSFLLRGWW 555
           YA  G ++Y++C ++    +RGW+
Sbjct: 317 YALGGISVYVICLLSDRTNIRGWF 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,051,173
Number of Sequences: 5004
Number of extensions: 64559
Number of successful extensions: 178
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)