Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2p11
         (752 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0760 + 27017956-27018433,27018487-27019234,27023760-270243...    31   0.74 
07_03_0404 + 17764811-17764954,17765048-17765188,17765277-177653...    29   5.2  
04_01_0545 + 7046861-7047955,7048822-7049436,7052887-7054692           29   5.2  
02_04_0621 - 24502383-24502476,24502532-24504015,24504125-245041...    28   6.9  
11_03_0100 + 9997577-9997756,9999762-10000052,10000460-10000584,...    28   9.2  
09_01_0067 + 1001137-1002708,1003476-1003529                           28   9.2  
08_02_0096 - 12296913-12296951,12297205-12297282,12297335-122973...    28   9.2  

>11_06_0760 +
           27017956-27018433,27018487-27019234,27023760-27024378,
           27030755-27032440
          Length = 1176

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -3

Query: 606 FVYCMLGYWKFPPPRMVAERLVDKDIPAYRSRDNDSLNVIGTERMT 469
           FV  + GYW  PPP     RL  +   + R    DS+N+     +T
Sbjct: 664 FVTVVGGYWLMPPPSSKVRRLAIQSGDSKRGSGTDSMNLSHVRSLT 709


>07_03_0404 +
           17764811-17764954,17765048-17765188,17765277-17765348,
           17765460-17765588,17765705-17765761,17765831-17765932,
           17766186-17766326,17766493-17766585,17766780-17766869
          Length = 322

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 324 KYEFMINRTDFVINPGEVKKVQIYVEYNITSSP 422
           KY   +N  D ++  G+ KK+ ++++Y+ T SP
Sbjct: 50  KYPSALNAFDHIVAYGKGKKIALFLDYDGTLSP 82


>04_01_0545 + 7046861-7047955,7048822-7049436,7052887-7054692
          Length = 1171

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 691 DTGPPNRSSTSLFSVLFVGLETTPLSVVLCILYVGLLEV 575
           +T P   S   LFS +    E  P S+  CILY+ + +V
Sbjct: 632 ETNPEFVSLRDLFSWMHFSFEALPHSIKPCILYLAVFQV 670


>02_04_0621 -
           24502383-24502476,24502532-24504015,24504125-24504177,
           24504871-24504984,24505068-24505202,24505960-24506055,
           24506692-24506827
          Length = 703

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 22/96 (22%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
 Frame = +3

Query: 246 LWLNIHLDDNYSEAFKNCLGSVTQENKYEFMINRTDFVI---NPGEVKKVQIYVEYNITS 416
           LW ++H   ++ + F   LG +++EN Y  + +   F++   NP ++    + + + + S
Sbjct: 599 LWSSVHHLQSHDDDFGAVLGFMSEENTYNDLEDHCSFMLAEGNPNDLCTSDLPL-FGLCS 657

Query: 417 SPPKMIGIAFNGRRICGPSFVLSLLHSDYRYHGTDM 524
           +   M GI     R+ G  F+L    +     GT++
Sbjct: 658 A---MDGIREASVRLDGLRFILLADGTSMNVEGTEV 690


>11_03_0100 +
           9997577-9997756,9999762-10000052,10000460-10000584,
           10000742-10001630
          Length = 494

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = -2

Query: 670 SSTSLFSVLFVGLETTPLSVVLCILYVGLLEVSSSE--DGGRALG 542
           SS+++ SV ++  +   L VV    +VGLLE  SSE  DG +++G
Sbjct: 344 SSSAMMSVFWLTPQFFLLGVVDVTSFVGLLEFFSSEASDGMKSIG 388


>09_01_0067 + 1001137-1002708,1003476-1003529
          Length = 541

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 603 QSTTDSGVVSNPTNKTENKDVDDLFGGP 686
           +S  +SGV+ N  + T   D+DD  GGP
Sbjct: 462 RSVDESGVLENAGSDTLPDDLDDRIGGP 489


>08_02_0096 -
           12296913-12296951,12297205-12297282,12297335-12297345,
           12298140-12299044,12299074-12299243
          Length = 400

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 650 SLVCWIRNYAAVGSALYIVCWV 585
           SL  W RN ++ G+A ++ CWV
Sbjct: 270 SLYVWSRNASSEGAAEWVQCWV 291


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,095,233
Number of Sequences: 37544
Number of extensions: 425262
Number of successful extensions: 1082
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)