Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2p11
         (752 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81127-9|CAB03394.3|  735|Caenorhabditis elegans Hypothetical pr...    31   0.66 
Z81056-11|CAB02911.3|  735|Caenorhabditis elegans Hypothetical p...    31   0.66 
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for...    29   2.7  
AF040648-7|AAK26140.1|  386|Caenorhabditis elegans Lethal protei...    29   2.7  
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei...    29   2.7  
U41558-1|AAK39248.1|  333|Caenorhabditis elegans Hypothetical pr...    29   3.5  

>Z81127-9|CAB03394.3|  735|Caenorhabditis elegans Hypothetical
           protein F09F3.9 protein.
          Length = 735

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
 Frame = +3

Query: 189 HPGRWYGVIKLSSD---YTIHSLWLNI----HLDDNYSEAFKNCLGSVTQENKYEFMINR 347
           H G WY V     +   Y++ +L   +    H  D  ++ F + +GS+T + + E+ INR
Sbjct: 303 HKGTWYKVDTFDRNGKLYSVDNLAKIVSEIMHRQDK-ADGFLSKIGSLTTDRRTEWSINR 361

Query: 348 TDFVINPGEVKKVQIYVE 401
             F +N    KK+   +E
Sbjct: 362 EKFFLNNKNNKKLLEIIE 379


>Z81056-11|CAB02911.3|  735|Caenorhabditis elegans Hypothetical
           protein F09F3.9 protein.
          Length = 735

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
 Frame = +3

Query: 189 HPGRWYGVIKLSSD---YTIHSLWLNI----HLDDNYSEAFKNCLGSVTQENKYEFMINR 347
           H G WY V     +   Y++ +L   +    H  D  ++ F + +GS+T + + E+ INR
Sbjct: 303 HKGTWYKVDTFDRNGKLYSVDNLAKIVSEIMHRQDK-ADGFLSKIGSLTTDRRTEWSINR 361

Query: 348 TDFVINPGEVKKVQIYVE 401
             F +N    KK+   +E
Sbjct: 362 EKFFLNNKNNKKLLEIIE 379


>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
            protein.
          Length = 4450

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 49   WLL*ILYQLIVVSLHCCSYCWCQLKRSRSPR 141
            WLL  L   ++++L CC   WC  +R RS +
Sbjct: 3910 WLLLPLLAALLLTLLCCCIPWCLKRRYRSSK 3940


>AF040648-7|AAK26140.1|  386|Caenorhabditis elegans Lethal protein
           805, isoform c protein.
          Length = 386

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 49  WLL*ILYQLIVVSLHCCSYCWCQLKRSRSPR 141
           WLL  L   ++++L CC   WC  +R RS +
Sbjct: 19  WLLLPLLAALLLTLLCCCIPWCLKRRYRSSK 49


>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
            805, isoform b protein.
          Length = 4450

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 49   WLL*ILYQLIVVSLHCCSYCWCQLKRSRSPR 141
            WLL  L   ++++L CC   WC  +R RS +
Sbjct: 3910 WLLLPLLAALLLTLLCCCIPWCLKRRYRSSK 3940


>U41558-1|AAK39248.1|  333|Caenorhabditis elegans Hypothetical
           protein K02B2.3 protein.
          Length = 333

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 4/105 (3%)
 Frame = -1

Query: 584 TGSFLLRGWWQSAWSIRTSPHIGPVITIV*M**GQ---NE*RPAY-SATIKCYTYHFRRR 417
           TG F    WW+ +W I          + V    G     +    Y SA  + YT  F RR
Sbjct: 226 TGLFARLTWWEYSWDIMEPVTYFATYSTVCATFGYYLYTQQSFEYPSARERVYTKQFYRR 285

Query: 416 ARNVIFDINLYFLHFPGVDYEIRSVDHKFVFVLLRHAP*TVLKRL 282
           A+   FDI  Y      VD E+R+   +    L +H P + L  L
Sbjct: 286 AQKQNFDIEKYNRLVTEVD-ELRNQLKRMRDPLFQHLPVSYLSNL 329


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,974,311
Number of Sequences: 27780
Number of extensions: 363208
Number of successful extensions: 849
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)