Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2p06
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   1.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.8  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   5.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.7  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 14   HFDKCGLCTFCKQIVDTLSLINHIYFQMS 100
            HF  CG CT  + +  TL  I   + +M+
Sbjct: 1068 HFYVCGDCTMAEDVYQTLKHIIQTHGEMT 1096


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 140 IHYNIYYSSVHSYGTFE 90
           IHYN+ YSS+  YG F+
Sbjct: 596 IHYNLPYSSL--YGRFK 610


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 5   LLSHFDKCGLCTFC 46
           L SH D+ G  TFC
Sbjct: 257 LFSHNDRLGFLTFC 270


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = +3

Query: 153 TAGDDDLQLKDELFEKNDKPYFIEKEETTKAILQLFDKKKQELDAQKDAEEEIQKKLKSI 332
           T  +DD+  + E  E+NDK   ++  +  +  +QL D      D + + E  I    K I
Sbjct: 310 TGMNDDIPPETEEEEENDKKLDLDSIDMMQLPIQLDDGIDILDDVKCEDERVISIPDKEI 369

Query: 333 KLDSQFE 353
            + S  E
Sbjct: 370 TVPSNEE 376


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,614
Number of Sequences: 438
Number of extensions: 3336
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)