Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2p05
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    29   0.53 
SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyce...    28   1.6  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    28   1.6  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    28   1.6  
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual        27   2.8  
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ...    26   4.9  
SPAC3H1.07 |||arginase |Schizosaccharomyces pombe|chr 1|||Manual       26   6.5  
SPCC16C4.20c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    26   6.5  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    26   6.5  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    26   6.5  
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    25   8.6  

>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 1/110 (0%)
 Frame = +3

Query: 264 DQSEPVYLFIFKQKVTNIFRGVDSIKFAEVAKREVNIYEKEIEGYESERPTYDLSEPTPD 443
           ++S+ +Y       ++   R V S    E     +NI   E+E     +  YD     P 
Sbjct: 92  NKSQILYFLYLLSPISQSSRDVSSHLLDESISNPINIPSTEVESSNFGQTRYDQVPENPQ 151

Query: 444 EIVWFNKLSMEKELEVAAQHDR-RVARQAARKRHRAELMVPHLERINFVL 590
              W   L  E  + +A    R   + + +  +H        L  I++VL
Sbjct: 152 ITDWDEGLENESSISIAHDSSRLNRSTETSSVQHTLITEADLLSSISYVL 201


>SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = +3

Query: 360 REVNIYEKEIEGY-ESERPTYDLSEPTPDEIVWFNKLSMEKE-LEVAAQHDRRVARQAAR 533
           R +  Y  E++GY  +     D S  T  +      +    E L V  Q  R +  + +R
Sbjct: 77  RNIFSYPPELKGYMRTFGKDVDYSITTEQDAAMDQAIQEAAEKLVVKMQLRRDLRMRLSR 136

Query: 534 KRHRAELMVPHLERINFV 587
           KR +   +  HLERI+F+
Sbjct: 137 KREKKTEIEKHLERISFL 154


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -2

Query: 256 LRNESTSSDGTF-SRIIFPLLQSYLMIVKSLSSAVQAPTNWLYTSAQI 116
           L + STS+   F   +IF L  +Y  +   LS+   +  NW+Y+  Q+
Sbjct: 503 LLDHSTSTISLFFGLLIFTLKSAYGYLTHRLSALYTSSENWVYSEQQL 550


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
 Frame = -2

Query: 475 SIDNLLNHTISSGVGS--LRSYVGLSLSYPSISFS*IFTSRLATSANLMLSTPRNMFVTF 302
           +I +  + T SS + S  + S +  S S P+ S S   +S    S+ +  S+  + F + 
Sbjct: 517 AIPSTSSSTPSSSIISSPMTSVLSSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFSSV 576

Query: 301 CLKINKYTGSL*SRNLRNESTSSDGTFSRIIFPLLQSYLMIVKSLSSAVQAPT 143
              ++  T S  S +L   S+S+  TFS        S    + S S+ + +PT
Sbjct: 577 SSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSPT 629


>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 450

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +3

Query: 288 FIFKQKVTNIFRGVDSIKFAEVAKREVNIYEKEIEGYESERPTYDLSE 431
           F+    +  I    D   F EV   + +I EKEI+     + T+D SE
Sbjct: 337 FVISNGIVVIETEDDEASFEEVDDAKESIQEKEIDETTESKATHDSSE 384


>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +3

Query: 180 IIKYDWSNGKIILLKVPSDE-VDSLRRF 260
           I+K+D+ NGK I+ +   D+ +++LR F
Sbjct: 347 IVKFDFGNGKSIVHEFSKDDNIETLRAF 374


>SPAC3H1.07 |||arginase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 323

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 426 SEPTPDEIVWFNKLSMEKELEVAAQHD-RRVARQAARKRHRAELMVPHLER 575
           +EP P+E  W  ++  E+ L      D   + R   R+R+ A   + H+++
Sbjct: 170 AEPLPEEFAWTKRVIEERRLAFIGLRDLDPMERAFLRERNIAAYTMHHVDK 220


>SPCC16C4.20c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 77

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 471 MEKELEVAAQHDRRVARQAARKRHRAELMVPHLER 575
           +EKE E+ A     V R   R RH A+L+   LE+
Sbjct: 31  IEKECEMYAVKIYNVERDIQRYRHEAQLLSKVLEK 65


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 15/78 (19%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
 Frame = +3

Query: 354 AKREVNIYEKEIEGYE-SERPTYDLSEPTPDEIVWFNKL-SMEKELEVAAQHDRRVARQA 527
           +K   ++ +  +   E S +P+ DLS PT  +++ F++   + +          + A++ 
Sbjct: 189 SKENASVADSRVTAEETSTKPSEDLSSPTKKDLIDFSETRPLAQASRATPDIKEQHAKKP 248

Query: 528 ARKRHRAELMVPHLERIN 581
            RK  R+ +   ++E ++
Sbjct: 249 KRKHTRSTVPTSNVEPVS 266


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 144 VGACTALDRLFTIIKYDWSNGKIILLKV 227
           +GAC A+  LF I  Y W N     L+V
Sbjct: 368 IGACCAMSFLFYITFYCWDNYYYSFLQV 395


>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 445 KLYGLTNYLWKKSLRSPPSMIVEWLDRLPGSDTEL 549
           K+YGL + LW   LR     ++E +D +   D  +
Sbjct: 413 KIYGLQSVLWYSKLRK----LIEMMDNIKNKDRSI 443


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,021,545
Number of Sequences: 5004
Number of extensions: 61867
Number of successful extensions: 214
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)