Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2p05
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23168-6|AAP86623.1|  114|Caenorhabditis elegans Hypothetical pr...    38   0.010
DQ241300-1|ABB45864.1|  114|Caenorhabditis elegans TRX-1b protein.     38   0.010
U23168-7|AAC38808.1|  115|Caenorhabditis elegans Hypothetical pr...    36   0.040
DQ241299-1|ABB45863.1|  115|Caenorhabditis elegans TRX-1a protein.     36   0.040
U20862-3|AAN65283.1|  137|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U20862-2|AAK29864.1|  179|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AF248541-1|AAF63761.1|  179|Caenorhabditis elegans cysteine-rich...    30   1.5  
AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical ...    30   2.0  
AF098995-13|AAC67476.2|   95|Caenorhabditis elegans Hypothetical...    29   2.6  
U64857-4|AAN84850.1|  356|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z69634-2|CAA93451.2|  926|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z68297-6|CAE45045.1|  302|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AL132902-7|CAB81993.1|  485|Caenorhabditis elegans Hypothetical ...    28   6.0  
AF125951-2|AAD14691.1|  643|Caenorhabditis elegans Hypothetical ...    28   8.0  
AC024849-1|AAK68546.2|  374|Caenorhabditis elegans Hypothetical ...    28   8.0  

>U23168-6|AAP86623.1|  114|Caenorhabditis elegans Hypothetical
           protein B0228.5b protein.
          Length = 114

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
 Frame = +3

Query: 57  IEIKNEKEFKNILRTHSEALICAEVYSQFVGACTALDRLFTIIKYDWSNGKIILLKVPSD 236
           +E+ +  +F+ ++R H E +I  + Y+ + G C A+  L+   +   ++  II  KV  D
Sbjct: 9   LELADMSDFEQLIRQHPEKIIILDFYATWCGPCKAIAPLYK--ELATTHKGIIFCKVDVD 66

Query: 237 EVDSL-RRFRDQSEPVYLF 290
           E + L  ++  +  P ++F
Sbjct: 67  EAEDLCSKYDVKMMPTFIF 85


>DQ241300-1|ABB45864.1|  114|Caenorhabditis elegans TRX-1b protein.
          Length = 114

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
 Frame = +3

Query: 57  IEIKNEKEFKNILRTHSEALICAEVYSQFVGACTALDRLFTIIKYDWSNGKIILLKVPSD 236
           +E+ +  +F+ ++R H E +I  + Y+ + G C A+  L+   +   ++  II  KV  D
Sbjct: 9   LELADMSDFEQLIRQHPEKIIILDFYATWCGPCKAIAPLYK--ELATTHKGIIFCKVDVD 66

Query: 237 EVDSL-RRFRDQSEPVYLF 290
           E + L  ++  +  P ++F
Sbjct: 67  EAEDLCSKYDVKMMPTFIF 85


>U23168-7|AAC38808.1|  115|Caenorhabditis elegans Hypothetical
           protein B0228.5a protein.
          Length = 115

 Score = 35.5 bits (78), Expect = 0.040
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
 Frame = +3

Query: 72  EKEFKNILRTHSEALICAEVYSQFVGACTALDRLFTIIKYDWSNGKIILLKVPSDEVDSL 251
           + +F+ ++R H E +I  + Y+ + G C A+  L+   +   ++  II  KV  DE + L
Sbjct: 15  QSDFEQLIRQHPEKIIILDFYATWCGPCKAIAPLYK--ELATTHKGIIFCKVDVDEAEDL 72

Query: 252 -RRFRDQSEPVYLF 290
             ++  +  P ++F
Sbjct: 73  CSKYDVKMMPTFIF 86


>DQ241299-1|ABB45863.1|  115|Caenorhabditis elegans TRX-1a protein.
          Length = 115

 Score = 35.5 bits (78), Expect = 0.040
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
 Frame = +3

Query: 72  EKEFKNILRTHSEALICAEVYSQFVGACTALDRLFTIIKYDWSNGKIILLKVPSDEVDSL 251
           + +F+ ++R H E +I  + Y+ + G C A+  L+   +   ++  II  KV  DE + L
Sbjct: 15  QSDFEQLIRQHPEKIIILDFYATWCGPCKAIAPLYK--ELATTHKGIIFCKVDVDEAEDL 72

Query: 252 -RRFRDQSEPVYLF 290
             ++  +  P ++F
Sbjct: 73  CSKYDVKMMPTFIF 86


>U20862-3|AAN65283.1|  137|Caenorhabditis elegans Hypothetical
           protein W06E11.5b protein.
          Length = 137

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +3

Query: 237 EVDSLRRFRDQSEPVYLFIFKQKVTNIFRGVDSIKFAEVAKREVNIYEKEIEGY 398
           E+D +    ++SEP+Y  I K+K   + RGV +I    +  R    Y  E+ GY
Sbjct: 20  EIDVMPSSDEESEPIY--IPKEKEPVVIRGVGNITVFGMNSRFNTEYPPELTGY 71


>U20862-2|AAK29864.1|  179|Caenorhabditis elegans Hypothetical
           protein W06E11.5a protein.
          Length = 179

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +3

Query: 237 EVDSLRRFRDQSEPVYLFIFKQKVTNIFRGVDSIKFAEVAKREVNIYEKEIEGY 398
           E+D +    ++SEP+Y  I K+K   + RGV +I    +  R    Y  E+ GY
Sbjct: 20  EIDVMPSSDEESEPIY--IPKEKEPVVIRGVGNITVFGMNSRFNTEYPPELTGY 71


>AF248541-1|AAF63761.1|  179|Caenorhabditis elegans cysteine-rich
           hydrophobic protein protein.
          Length = 179

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = +3

Query: 237 EVDSLRRFRDQSEPVYLFIFKQKVTNIFRGVDSIKFAEVAKREVNIYEKEIEGY 398
           E+D +    ++SEP+Y  I K+K   + RGV +I    +  R    Y  E+ GY
Sbjct: 20  EIDVMPSSDEESEPIY--IPKEKEPVVIRGVGNITVFGMNSRFNTEYPPELTGY 71


>AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical
            protein R193.2 protein.
          Length = 1853

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 440  GRGLTQVIRWSFALVSFYFLFVNIHFTFGY 351
            GR LT     +FA+ S+Y+L V IH  F Y
Sbjct: 912  GRALTSSTPINFAIASYYYLDVLIHADFTY 941


>AF098995-13|AAC67476.2|   95|Caenorhabditis elegans Hypothetical
           protein F58E1.13 protein.
          Length = 95

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +3

Query: 321 RGVDSIKFAEVAKREVNIYEKEIEGYESERPTYDLSEPTP 440
           +G+   KF    + +V+IY KE     SE+P +D++ PTP
Sbjct: 28  QGLKFSKFVANNQNKVDIYIKETV---SEKPEFDITHPTP 64


>U64857-4|AAN84850.1|  356|Caenorhabditis elegans Hypothetical
           protein C37C3.7 protein.
          Length = 356

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = +3

Query: 468 SMEKELEVAAQHDRRVARQAARKRHRAELMVPHLERINFVLFWPHCKHAHPELYEQ 635
           S +K +E AA+H ++V +    +     + V  L  + FV F   C H +    +Q
Sbjct: 225 SKKKHIEKAAEHRQKVKKGIRNRLRIIAICVAALSVVAFVAFMGRCMHKNATTAKQ 280


>Z69634-2|CAA93451.2|  926|Caenorhabditis elegans Hypothetical
           protein B0001.2 protein.
          Length = 926

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +3

Query: 27  KMAKRKIDLFIEIK---NEKEFKNILRTHSEALICAEVYSQFVGACTAL 164
           KM  + ID   +I+   ++++  N+ RT    +    +YSQFV  C  L
Sbjct: 851 KMENQDIDEVFKIEKNDSDRQVNNLFRTKLTCMPSETIYSQFVQVCKIL 899


>Z68297-6|CAE45045.1|  302|Caenorhabditis elegans Hypothetical
           protein F11A10.8 protein.
          Length = 302

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +3

Query: 456 FNKLSMEKELEVAAQHDRRVARQA--ARKRHRAELMVPHLERINFVLFWPHCKHAHP 620
           F  +  E +++    +DR   R     + RHR   + P+     F L  P C++AHP
Sbjct: 126 FRHIDPETKMKDCPWYDRGFCRHGPYCKHRHRRRAVCPNY-LAGFCLQGPDCQYAHP 181


>AL132902-7|CAB81993.1|  485|Caenorhabditis elegans Hypothetical
           protein Y71A12B.8 protein.
          Length = 485

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +3

Query: 255 RFRDQSEPVYLFIFKQKVTNIFRGVDSIKFAEVAKREVNIYE-KEIEGYESERPTYDLSE 431
           RF D +  V   ++KQ V  +FR + +++   +      I     IE     RP     +
Sbjct: 147 RFFDDNPNVLKEVYKQDVNEVFRAIQTVRSIALQSYSTRILSFLNIETRRFVRPGAGWKK 206

Query: 432 PTPDEIV 452
           P+ +++V
Sbjct: 207 PSENQVV 213


>AF125951-2|AAD14691.1|  643|Caenorhabditis elegans Hypothetical
           protein D2063.2 protein.
          Length = 643

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 282 YLFIFKQKVTNIFRGVDSIKFAEVAKREVNIYEKEIEGYESERPTY 419
           YL +F  K+TN+++ VDS  F+        +Y     G E  RP Y
Sbjct: 594 YLPLFFNKITNMYQYVDSRGFSYF----TTLYHLSAHGIELVRPIY 635


>AC024849-1|AAK68546.2|  374|Caenorhabditis elegans Hypothetical
           protein Y67D8B.1 protein.
          Length = 374

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 23/80 (28%), Positives = 41/80 (51%)
 Frame = +3

Query: 216 LLKVPSDEVDSLRRFRDQSEPVYLFIFKQKVTNIFRGVDSIKFAEVAKREVNIYEKEIEG 395
           +L++ S E++      + SE    FI  ++V   F      K+  +A+ E+   E E++ 
Sbjct: 289 ILRIDS-EINRRMHELEHSEREKSFIKSEEVGGFF------KYRAIAQ-EIQDSEAELKN 340

Query: 396 YESERPTYDLSEPTPDEIVW 455
            +S+R   DLS  +P+E VW
Sbjct: 341 LKSQRD--DLSRSSPNETVW 358


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,741,763
Number of Sequences: 27780
Number of extensions: 350630
Number of successful extensions: 1101
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)