Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2p05
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   4.0  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   4.0  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   5.3  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   9.2  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 135 SQFVGACTALDRLFTIIK 188
           S FV  C ++DR + +IK
Sbjct: 125 SSFVLVCISMDRYYAVIK 142


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 18  LIVKMAKRKIDLFIEIKNEKEFKNILRTHSE 110
           L+V++A   +  FI +KN+  F+NI   + E
Sbjct: 92  LLVQIAVA-VYAFIVVKNDDNFRNISEKYQE 121


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -1

Query: 389 YFLFVNIHFTFGYFCEFDAVHP-TKY 315
           +F+F++  F F    +F  VH  TKY
Sbjct: 278 FFVFLSFAFIFATIIQFAVVHYFTKY 303


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 250 YGDSAIKANQC 282
           YGD A+K  QC
Sbjct: 33  YGDEALKERQC 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,750
Number of Sequences: 438
Number of extensions: 4511
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)